Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17j16r
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.52 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.52 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 449 FLFQIIDKQRVSVFCIIFAL 508
           ++FQ++D   VS FC++F +
Sbjct: 440 YVFQLLDSYAVSGFCLLFLM 459


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 449 FLFQIIDKQRVSVFCIIFAL 508
           ++FQ++D   VS FC++F +
Sbjct: 493 YVFQLLDSYAVSGFCLLFLM 512


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 560 LTVRMRIRTTHNGTLVF 610
           L+++ ++ TTH+GT +F
Sbjct: 448 LSLKNKVETTHSGTSLF 464


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 281 LHDFG*AFLLGGVQVGQPLWGTVQW*QHRFVRPNRP 388
           L DFG + L+G        +GT  +     ++ NRP
Sbjct: 196 LTDFGSSVLIGAPNEIDKFYGTPGYTAPEVIKQNRP 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,944
Number of Sequences: 438
Number of extensions: 5830
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)