Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17j16f
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 149 4e-37
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 30 0.36
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 28 1.4
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.5
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 27 2.5
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 26 4.4
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 26 5.8
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 25 7.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.7
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 149 bits (361), Expect = 4e-37
Identities = 88/230 (38%), Positives = 116/230 (50%), Gaps = 20/230 (8%)
Frame = +1
Query: 52 EFKSTEHQHIRYNPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPP--DPNNPLRAGALRSS 225
+F TE+ H RYNPL D +VL SPHR RPW G E +D DP L G +R++
Sbjct: 5 KFDFTEYSHRRYNPLTDSYVLCSPHRAKRPWQGAKEEIKKDDTVKYDPTCYLCPGNIRAT 64
Query: 226 GKRNPDYTSTYVFPNDFXXXXXXXXXXXXXXXXX----------FQSAPAKGTCRVMCFH 375
G NP Y +TYVFPND+ F++ KG C V+CF
Sbjct: 65 GFENPKYETTYVFPNDYPAVRVDQPDYMQDESEITKGNTLKTRMFKTEGVKGKCFVICFC 124
Query: 376 PDSTMTIPLMKXXXXXXXXXXWINQLNELGQ-------RYTWVQIFENKGAIMGCSNPHP 534
P+ +T+PLM W + L + RY ++QIFENKG+ MGCSNPHP
Sbjct: 125 PNHNLTLPLMSAEAICNVVETWKHLYVTLKKESLEGPIRYKYLQIFENKGSAMGCSNPHP 184
Query: 535 HCQIWASSFLPNEPRIKDRCQSEYYAKYGNS-LLVDYLKQELKLKERIVL 681
H Q W +P+ ++ C Y + NS LL DY+K E+ KERIV+
Sbjct: 185 HGQAWCLDVIPSVV-AQEMCNMTKYFELNNSHLLGDYVKLEMLEKERIVV 233
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +1
Query: 556 SFLPNEPR---IKDRCQSEYYAKYGNSLLVDYLKQEL-KLKERI 675
SF + P IKDRC + Y AK ++LLV ++++ L +K R+
Sbjct: 291 SFFEHHPAYRTIKDRCGTPYLAKTLSNLLVSHIRERLPDIKARL 334
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 113 NTHSSFRGLYLMCWCSVDLN 54
++H SFR L+CWC LN
Sbjct: 583 DSHFSFRSQILICWCYYRLN 602
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 70 HQHIRYNPLKD-EWVLVSPHRCLRPWSGQTEAAPEDQP 180
H+ +R N L+ E + PHR + G + +PED P
Sbjct: 261 HRSLRLNELEHLESLARDPHRMVSLVDGMSNGSPEDSP 298
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 49 MEFKSTEHQHIRYNPLKDEWVLVSPHRCLRPWSG 150
+EF+ Q R L ++W+L P C PW G
Sbjct: 441 IEFEDAIKQFDRCRILYEKWILYDPEAC-APWLG 473
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 589 YP*SWARSVRSWTPIFDSEDAD 524
YP + ++ WTP+ D+E+AD
Sbjct: 107 YPENPLCFIKQWTPVIDAENAD 128
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 224 VESVTQTTHPHTCSRMTSQRFSRMCQSLQNRNT 322
++++ T HPHT +T Q + + + N++T
Sbjct: 209 IDAIGATAHPHTMLGVTKQGLAAITMTRGNKDT 241
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 125 CGDTNTHSSFRGLYLMCWC 69
CGD + H F G+ + WC
Sbjct: 212 CGDDDDHVDFYGINIYEWC 230
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 604 YYAKYGNSLLVDYLKQELKLK 666
YY YGN + + Y K EL++K
Sbjct: 1172 YYKLYGNKVSLTYPKFELRIK 1192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,125
Number of Sequences: 5004
Number of extensions: 61303
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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