Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17j16f
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0510 - 3794793-3795047,3796005-3796295,3796850-3796906,379... 40 0.002
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 34 0.12
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 31 0.85
03_03_0256 + 15898702-15900420 31 0.85
03_06_0039 + 31235840-31236214,31237057-31237674 30 1.5
03_06_0577 - 34842951-34843057,34843472-34843661,34843748-348438... 29 2.6
10_08_0810 + 20734490-20734606,20735182-20735433,20735521-207356... 29 3.4
01_06_1034 + 33962813-33963802 29 3.4
03_06_0040 + 31240164-31241102,31241280-31241897 29 4.5
03_06_0037 + 31222963-31223886,31225172-31225786 29 4.5
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 28 7.9
03_06_0038 + 31227349-31227621,31228120-31228212,31229439-312295... 28 7.9
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 28 7.9
>07_01_0510 -
3794793-3795047,3796005-3796295,3796850-3796906,
3797021-3797055,3797132-3797172,3798020-3798519
Length = 392
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 487 IFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLK 666
+F+N GA G S H H Q+ + F+P + C E + + G L ++ +++ ++
Sbjct: 212 VFKNHGASAGASMAHSHSQMLGTPFVPPSVTTRLNCMKEVFERLGKCSLCEFQSKDILVR 271
Query: 667 E 669
E
Sbjct: 272 E 272
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +1
Query: 118 SPHRCLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNP 240
SP R P Q A PE Q P P NP++AGA SS ++NP
Sbjct: 1947 SPAREPSPNPVQAGAPPEQQNPTPPNPVQAGA--SSEQQNP 1985
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 221 PVESVTQTTHPHTCSRMTSQRFSRMCQSLQN 313
P+ES+T+ CSR TSQ FS M + L+N
Sbjct: 355 PIESITKQDAAG-CSRSTSQNFSSMVEDLRN 384
>03_03_0256 + 15898702-15900420
Length = 572
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 88 NPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGK 231
NP DEW+L + PW+G+ EA P + + A A + + K
Sbjct: 178 NPASDEWILRNKQ---SPWAGKKEAPPAELTEEQRQYAEAHAAKKAEK 222
>03_06_0039 + 31235840-31236214,31237057-31237674
Length = 330
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 547 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVD 639
WA S L N P+I + ++E A GNS L++
Sbjct: 141 WAMSLLLNHPKILKKAKAEIDASVGNSRLIN 171
>03_06_0577 -
34842951-34843057,34843472-34843661,34843748-34843829,
34844587-34844768
Length = 186
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 245 THPHTCSRMTSQRFSRMCQSLQNRNTHCSNLHRPK 349
+ P C R + +F C SL+NRN S H+P+
Sbjct: 21 SRPDICKRNSHLKF---CYSLRNRNVFVSKTHKPR 52
>10_08_0810 +
20734490-20734606,20735182-20735433,20735521-20735664,
20735774-20736493,20736955-20737177,20737463-20737523,
20738294-20738615
Length = 612
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 478 WVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRI 582
+++ E ++ C PHPH ASS + N+ +I
Sbjct: 361 FLRAMEGDECVVNCIEPHPHTMTIASSGIDNDVKI 395
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 130 CLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTSTYVFPND 273
C+ PW Q + P + P P++ R+G+ RSS + + S V +D
Sbjct: 218 CIIPWLVQHNSCPVCRHPLPSSSHRSGSTRSSSTHSNEAISHGVARSD 265
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 547 WASSFLPNEPRIKDRCQSEYYAKYGNSLLV 636
WA S L N P I + Q+E GNS L+
Sbjct: 329 WAMSLLLNHPEILKKAQAEIDMSVGNSRLI 358
>03_06_0037 + 31222963-31223886,31225172-31225786
Length = 512
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 547 WASSFLPNEPRIKDRCQSEYYAKYGNSLLV 636
WA S L N P + Q+E A GNS L+
Sbjct: 324 WAMSLLLNHPETLKKAQAEIDASVGNSRLI 353
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 100 DEWVLVS--PHRCL-RPWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTSTYVFPN 270
DEW S P R L RP G A P+ QPP P + R SS T+T V +
Sbjct: 11 DEWSNHSFKPSRVLKRPSRG---AQPDSQPPPPIDSFRYNPRPSSSSAAAAATATVVLSD 67
Query: 271 D 273
D
Sbjct: 68 D 68
>03_06_0038 +
31227349-31227621,31228120-31228212,31229439-31229575,
31229953-31231030,31231757-31232374
Length = 732
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 547 WASSFLPNEPRIKDRCQSEYYAKYGNSLLV 636
WA S L N P + Q+E A GNS L+
Sbjct: 543 WAMSLLLNHPDTLKKAQAEIDASVGNSRLI 572
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 130 CLRPWSGQTEAAPEDQPPDP 189
CLR W GQ AA + PDP
Sbjct: 17 CLREWKGQPAAAAAFRVPDP 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,246,644
Number of Sequences: 37544
Number of extensions: 418454
Number of successful extensions: 1224
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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