Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17j16f
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical pr...   180   6e-46
Z92827-1|CAB07326.1|  394|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   9.4  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK1058.3 protein.
          Length = 352

 Score =  180 bits (439), Expect = 6e-46
 Identities = 90/214 (42%), Positives = 122/214 (57%), Gaps = 7/214 (3%)
 Frame = +1

Query: 61  STEHQHIRYNPLKDEWVLVSPHRCLRPWSG-QTE-----AAPEDQPPDPNNPLRAGALRS 222
           S ++   RYNPL DEWV+V+ +R  RPW G +TE     +   +      NPL  G  RS
Sbjct: 2   SKQNNFRRYNPLIDEWVIVAVNRINRPWQGAKTEKSTTISTSSNTEQSILNPLAPGGTRS 61

Query: 223 SGKRNPDYTSTYVFPNDFXXXXXXXXXXXXXXXXX-FQSAPAKGTCRVMCFHPDSTMTIP 399
           SG  N +Y STYVF NDF                  F+    KG C+V+C+HP+S +T+ 
Sbjct: 62  SGIANENYVSTYVFDNDFPSFTEFEECAGKDENDDLFKQHEVKGVCKVICYHPNSQLTLA 121

Query: 400 LMKXXXXXXXXXXWINQLNELGQRYTWVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPR 579
            M           W  Q  ELG +Y WVQIFEN+GA++GCSN HPH Q+WAS++LP  P 
Sbjct: 122 TMDVKEVRVVIDIWNQQYLELGPKYEWVQIFENRGAVVGCSNMHPHGQLWASNYLPTLPM 181

Query: 580 IKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVL 681
            K   Q +++ K+G  +L+DYL+QE   KERI++
Sbjct: 182 KKHESQKKHFEKHGKVMLMDYLEQETLKKERIIM 215


>Z92827-1|CAB07326.1|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.1 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -2

Query: 175 DLPGPLPSARSKVEGTDAETPIPI---RLSEDCT 83
           DLP  +P      +  DAE P+P+    + EDCT
Sbjct: 119 DLPMKVPVIYCAAKAGDAEAPVPVIVMEMFEDCT 152


>Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical
           protein T06E4.11 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 142 WSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTSTY 258
           +S  ++ AP+  P  P  PL  G    S ++   YT  Y
Sbjct: 5   YSQASQQAPQGHPSGPQQPLMTGQYPPSQQKPQGYTQGY 43


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 572  SPGLRIDAKANIMQNTETLC 631
            SPG+    K N+M+NT+T C
Sbjct: 1595 SPGVTYAVKVNMMKNTKTFC 1614


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
            protein F07B7.12 protein.
          Length = 1900

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 572  SPGLRIDAKANIMQNTETLC 631
            SPG+    K N+M+NT+T C
Sbjct: 1531 SPGVTYAVKVNMMKNTKTFC 1550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,700
Number of Sequences: 27780
Number of extensions: 345084
Number of successful extensions: 982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)