Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17j14f
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 33 0.20
AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical ... 33 0.20
L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical p... 30 1.4
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 28 5.7
Z73425-1|CAA97784.1| 97|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 28 5.7
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 27 9.9
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 27 9.9
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 27 9.9
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical
protein K09E2.1 protein.
Length = 915
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -2
Query: 276 VPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLS--AAST 103
VP T+ +VPST T S SRT + +T S + A T R P L +A T
Sbjct: 582 VPSTTTSVTVPSTQKATPSPSRTTKKSTTTTSTTATPRQA---TPTRNPLPLLQTMSAIT 638
Query: 102 AFKPITPVEPKIT 64
AF + +E +T
Sbjct: 639 AFPTLLSMEKAVT 651
>AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical
protein Y53G8AL.2 protein.
Length = 431
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +2
Query: 68 IFGSTGVIGLNAVEAALKKGLE-VRAFVRDPAKLPEH--LKDKVEIV--KGNVLEPDSVH 232
+FG++G +GL V K G + + + +DP + EH L + +++ +++ +S+
Sbjct: 64 VFGASGFLGLPVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIR 123
Query: 233 EAVEGTDAVVITLGTR 280
+AV+ ++ V+ +GTR
Sbjct: 124 KAVKYSNVVINLIGTR 139
>L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical
protein ZC21.9 protein.
Length = 262
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -2
Query: 600 RNVPRSHLAMVLPGVFSGFTSIIISRLGSSV-KCGGNA 490
R+ +HLA V+PGVF+ ++ I++L SS C N+
Sbjct: 13 RDQRHAHLAQVVPGVFTSLVALSIAQLTSSCPSCNTNS 50
>Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical
protein F49A5.7 protein.
Length = 411
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -2
Query: 261 TTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLSAASTAFKPIT 85
+T ++P T T S + L ++ + S + +RT +R+ +P S AST +P+T
Sbjct: 80 STTNIPMTTFSTNEASSSTKLLSTSSTAEISST---TRTVSRSIKPETSTASTTIRPLT 135
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 273 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 175
P+ TT ++PST + TES S + + +T +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164
>Z73425-1|CAA97784.1| 97|Caenorhabditis elegans Hypothetical
protein F12F6.2 protein.
Length = 97
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 258 TASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLS 115
T S+PS SCT + R + + + C SF+ + ++ RPFLS
Sbjct: 45 TLSIPSV-SCTAAIDRKKEMMMKETMVVCVRSFSDALETSQRLRPFLS 91
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 273 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 175
P+ TT ++PST + TES S + + +T +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 237 PSKEQTLSSSP*GLGTTWRRLRIYLKE 317
PSK T+ P G G T + +R+YL E
Sbjct: 1166 PSKTITIRKGPFGFGFTLKSVRVYLGE 1192
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -2
Query: 267 VMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLSAASTAFKPI 88
+M T +VPS++ ++ S + P TI S S T S+P +A+STA I
Sbjct: 704 IMDT-TVPSSSGGADAESNSNPSTIEMADPE--SSTPSSSTQQSISKPKATASSTASSAI 760
Query: 87 TPVEPKITT 61
V K+++
Sbjct: 761 LQVVSKLSS 769
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 237 PSKEQTLSSSP*GLGTTWRRLRIYLKE 317
PSK T+ P G G T + +R+YL E
Sbjct: 1166 PSKTITIRKGPFGFGFTLKSVRVYLGE 1192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,622,054
Number of Sequences: 27780
Number of extensions: 339370
Number of successful extensions: 1055
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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