Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17j09r
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          27   0.32 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    27   0.32 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      27   0.32 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   2.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   5.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.8  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 516 HIYPSIASDYPMNKIS*NYFIVLTNLFLHIVPSHNHGLEGITRAL 382
           HIY   A  +P++K      +VL+N+ +  V  H+  +E +  AL
Sbjct: 639 HIYDGRAMGFPLDKPVDPLLLVLSNIHVKEVLVHHREMEELNVAL 683


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 725 LQLKNVFDVLVIGRFYLVFCFLVGTGTD 808
           + +KNV D+++ G  Y  F F +  GTD
Sbjct: 64  IMMKNVVDIVLGGLTYWAFGFAMSFGTD 91


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 516 HIYPSIASDYPMNKIS*NYFIVLTNLFLHIVPSHNHGLEGITRAL 382
           HIY   A  +P++K      +VL+N+ +  V  H+  +E +  AL
Sbjct: 639 HIYDGRAMGFPLDKPVDPLLLVLSNIHVKEVLVHHREMEELNVAL 683


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 694 NKCFLVIRNVISTVYRISLLLLYKHR 617
           +KCF+ + NV   V+ +  +  YK R
Sbjct: 559 HKCFMRVENVKGAVWTVDEVEFYKRR 584


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 367 QKCPAQCSGNSFKAVIMTWDNMQEKIGEYNKIIL*YFIHRIIGCYRRIN---VQELHDKL 537
           +K   + +G + + V      +  KI  ++ +++ Y     IG  +       QE+H+KL
Sbjct: 128 EKLEEREAGKTDEVVFRQTKAIANKINSWDNVVVAYEPVWAIGTGKTATPQQAQEVHEKL 187

Query: 538 RNQF 549
           RN F
Sbjct: 188 RNWF 191


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 748 RFGYWKILFGFLLLSWYWY 804
           R  YW+   G  L  W+W+
Sbjct: 195 RVAYWREDIGINLHHWHWH 213


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 259 LSCVLLIFKLQIDFCFSNSFH 197
           L C + +F   ++F F N+ +
Sbjct: 299 LGCTIFLFAAMVEFAFVNTIY 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,846
Number of Sequences: 438
Number of extensions: 4985
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)