Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17j09f
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 30 0.33
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac... 27 3.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.4
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 26 5.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 5.4
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 7.1
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 7.1
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 9.4
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 9.4
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 9.4
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 616 WYAP-KVGQWASAGKKVEWKTLILATILGMPGGVLLF 723
+Y P K +AGK+ W+TL+L+ + G G LF
Sbjct: 526 YYLPNKEANTYNAGKEASWETLLLSVVRGKSGIAFLF 562
>SPAC6F12.04 |||COPI-coated vesicle associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 27.1 bits (57), Expect = 3.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 233 FMGFTQITSGISYCQSTIISGIR 301
F+GF + +GI+YC + ++G++
Sbjct: 91 FLGFLVLLAGIAYCGANYVAGLQ 113
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 214 FWLGTVLHGIYADNFW 261
FW+ VL G+Y N+W
Sbjct: 357 FWIWIVLPGLYYQNYW 372
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 277 EYDNFWHSQTPIIFLGARLPLHIILLYPAFIYHAAYAVSKLNFPRYAEPFAVGLVTVLID 456
+Y + IFL A + I L +F YH V+ Y +PF + L VLI
Sbjct: 109 QYFQIFSKDPRAIFLSALYLIDPIRLVTSFNYHERIVVNSHMLLFYLKPFVIAL-PVLIG 167
Query: 457 I 459
+
Sbjct: 168 V 168
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 129 CRLGSPQLLDVIFSDAPIQPRFHLRSSSLHFM*PFDV 19
CR+G L + +F++ QP + R + + M F+V
Sbjct: 972 CRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEV 1008
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 243 NPMKYGTEPKIRPSSAFFKSMK 178
N MKYG E + RP+ +F+S K
Sbjct: 679 NIMKYGDEIRSRPARTWFQSEK 700
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 64 ETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFK--KGG 201
E WL + R + W++ P++ +S AV V+ L TLF F KGG
Sbjct: 891 ENWLIFITRCSG--PFWSSFPSWQLSGAVLVVDILATLFCIFGWFKGG 936
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 245 TQITSGISYCQSTIISGIRRPLSYSWEPGYPY 340
T +SG SY + ++ P+ YS+ G P+
Sbjct: 237 TSHSSGASYQNESANPPVQSPMQYSYSQGQPF 268
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 293 QKLSYSGNTKCQKLSA*IP 237
QK+ ++G+ CQKLS IP
Sbjct: 472 QKIYFTGSENCQKLSKQIP 490
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 64 ETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFK--KGG 201
E WL + R N W++ P++ +S AV + L T+F F KGG
Sbjct: 803 ENWLIFVTRCNG--PFWSSIPSWQLSGAVLAVDILATMFCIFGWFKGG 848
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,483,078
Number of Sequences: 5004
Number of extensions: 76918
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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