Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17j09f
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284...    34   0.11 
12_02_0295 + 17006064-17007063,17007068-17007666                       29   5.6  
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598...    29   5.6  
12_02_0291 + 16951154-16952740                                         28   7.4  
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792     28   7.4  
02_04_0506 - 23538982-23539221                                         28   7.4  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    28   7.4  
12_02_0277 + 16682836-16684368                                         28   9.8  
12_02_0275 + 16662206-16663738                                         28   9.8  

>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
            35037372-35038586,35038659-35039316,35039331-35041012
          Length = 1541

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 609  QKLVCAESWTVGFCGQKGGMENVNSSNDPGDARRCTPLRTDLSPAPRHIQNTFRDHI 779
            ++L+ A  +  G+  +K G + +N++N P    RC+  R    PA +H+Q    D +
Sbjct: 1310 KRLLTASPYDDGYQWRKYGQKKINNTNFPRSYYRCSYHRERRCPAQKHVQQRDGDDV 1366


>12_02_0295 + 17006064-17007063,17007068-17007666
          Length = 532

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 55  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 177
           A +ETW+ +      +  LW+  P ++  +A Y+++ L+ +
Sbjct: 2   ASVETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSLVPM 42


>07_01_0776 +
           5983684-5983857,5983962-5984072,5984151-5984302,
           5984403-5984460,5984568-5984616,5984714-5984958,
           5985129-5985206,5986016-5986246
          Length = 365

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 616 WYAPKVGQWASAGKKVEWKT--LILATILGMPGGVLLFVPIYHP 741
           W A     +A+AG    W    L+ A   G P G  +  P+YHP
Sbjct: 38  WAASLQAYYAAAGHPYAWPAQHLMAAAAAGAPYGAPVPFPMYHP 81


>12_02_0291 + 16951154-16952740
          Length = 528

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 55  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 177
           A +ETW+ +      +  LW+  P ++  +A Y+++ L+ +
Sbjct: 2   ASVETWVGFGSALAGVGLLWSRMPEHVHDEARYIISSLVPM 42


>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
          Length = 622

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 611 EIGMRRKLDSGLLRAKRWNG 670
           E+G+ R  D G+  A+RWNG
Sbjct: 65  ELGVARASDEGIRAARRWNG 84


>02_04_0506 - 23538982-23539221
          Length = 79

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 631 VGQWASAGKKVEWKTLILATILGMPGGVLLFVP 729
           VG  A AG +V W  L+   ++ + G + LF P
Sbjct: 45  VGASAGAGDRVPWPRLLAELLIWLVGCITLFAP 77


>01_03_0103 -
           12567986-12568141,12568307-12568442,12568751-12568824,
           12568932-12569175,12569480-12569766,12570618-12571103,
           12571348-12571459,12571540-12571745,12573071-12573276,
           12573831-12574162,12574284-12574825,12574967-12576308,
           12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 436 LVTVLIDIPYDIVAVKFVHWTWHDTDPNIFDRH 534
           ++  L+D       V   HWTW D D   +D H
Sbjct: 215 MILHLLDNHLSFARVGGTHWTWIDVDEQCWDYH 247


>12_02_0277 + 16682836-16684368
          Length = 510

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +1

Query: 55  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAF 189
           A +ETW+ +      +  LW+  P ++  +A Y+++ ++ +  ++
Sbjct: 2   ATLETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSVVPMVMSY 46


>12_02_0275 + 16662206-16663738
          Length = 510

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +1

Query: 55  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAF 189
           A +ETW+ +      +  LW+  P ++  +A Y+++ ++ +  ++
Sbjct: 2   ATLETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSVVPMVMSY 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,134,213
Number of Sequences: 37544
Number of extensions: 512839
Number of successful extensions: 1371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)