Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17j09f
         (796 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358572-1|AAQ88935.1|  489|Homo sapiens EAPD458 protein.              34   0.68 
AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protei...    31   6.3  
AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protei...    31   6.3  
AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein.    31   6.3  
AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein.    31   6.3  
AB011104-1|BAA25458.1| 1637|Homo sapiens KIAA0532 protein protein.     31   6.3  

>AY358572-1|AAQ88935.1|  489|Homo sapiens EAPD458 protein.
          Length = 489

 Score = 33.9 bits (74), Expect = 0.68
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +2

Query: 119 PNLHI*YLRPFTFWLAS*HYFMLLKKAEDGLIFGSVPYFMGFTQITSGISYCQSTII--- 289
           PNL + +L PF ++      F   +K   G ++ +V   M  T +  G+ +  S I+   
Sbjct: 120 PNLSLIFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLMLLTLLVLGMVWVASAIVDKN 179

Query: 290 SGIRRPLSYSWEPGYPYI*FCCIPHL 367
              R  L   WE   PY+ + CI  L
Sbjct: 180 KANRESLYDFWEYYLPYL-YSCISFL 204


>AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protein
            splice variant 1 protein.
          Length = 3997

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 609  QKLVCAESWTVGFCGQKGGMENVNSSNDPGDARRCTPLRTDLS-PAPRHIQNTFRDHILP 785
            +KLV ++ W +     + G ++ +S+++ G    C PL T  +  A   + + F    +P
Sbjct: 2393 KKLVSSDLWRIVLNSSQNGADDQSSASESGSQSTCDPLVTPTALAACTRVDSCFTPWFVP 2452

Query: 786  FXC 794
              C
Sbjct: 2453 SLC 2455


>AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protein
            protein.
          Length = 4022

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 609  QKLVCAESWTVGFCGQKGGMENVNSSNDPGDARRCTPLRTDLS-PAPRHIQNTFRDHILP 785
            +KLV ++ W +     + G ++ +S+++ G    C PL T  +  A   + + F    +P
Sbjct: 2418 KKLVSSDLWRIVLNSSQNGADDQSSASESGSQSTCDPLVTPTALAACTRVDSCFTPWFVP 2477

Query: 786  FXC 794
              C
Sbjct: 2478 SLC 2480


>AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein.
          Length = 3997

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 609  QKLVCAESWTVGFCGQKGGMENVNSSNDPGDARRCTPLRTDLS-PAPRHIQNTFRDHILP 785
            +KLV ++ W +     + G ++ +S+++ G    C PL T  +  A   + + F    +P
Sbjct: 2393 KKLVSSDLWRIVLNSSQNGADDQSSASESGSQSTCDPLVTPTALAACTRVDSCFTPWFVP 2452

Query: 786  FXC 794
              C
Sbjct: 2453 SLC 2455


>AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein.
          Length = 4022

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 609  QKLVCAESWTVGFCGQKGGMENVNSSNDPGDARRCTPLRTDLS-PAPRHIQNTFRDHILP 785
            +KLV ++ W +     + G ++ +S+++ G    C PL T  +  A   + + F    +P
Sbjct: 2418 KKLVSSDLWRIVLNSSQNGADDQSSASESGSQSTCDPLVTPTALAACTRVDSCFTPWFVP 2477

Query: 786  FXC 794
              C
Sbjct: 2478 SLC 2480


>AB011104-1|BAA25458.1| 1637|Homo sapiens KIAA0532 protein protein.
          Length = 1637

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 609 QKLVCAESWTVGFCGQKGGMENVNSSNDPGDARRCTPLRTDLS-PAPRHIQNTFRDHILP 785
           +KLV ++ W +     + G ++ +S+++ G    C PL T  +  A   + + F    +P
Sbjct: 33  KKLVSSDLWRIVLNSSQNGADDQSSASESGSQSTCDPLVTPTALAACTRVDSCFTPWFVP 92

Query: 786 FXC 794
             C
Sbjct: 93  SLC 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,887,027
Number of Sequences: 237096
Number of extensions: 3008451
Number of successful extensions: 9481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9481
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)