Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17j08f
         (754 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051980-1|AAK93404.1|  416|Drosophila melanogaster LD44970p pro...   210   2e-54
AJ252069-1|CAB64384.1|  416|Drosophila melanogaster putative suc...   210   2e-54
AE014296-966|AAF50771.1|  416|Drosophila melanogaster CG10622-PA...   210   2e-54
AY058331-1|AAL13560.1|  503|Drosophila melanogaster GH10480p pro...   130   2e-30
AE014297-840|AAF54308.2|  502|Drosophila melanogaster CG11963-PA...   130   2e-30
AE014296-967|AAN12099.1|  112|Drosophila melanogaster CG10622-PB...   102   6e-22

>AY051980-1|AAK93404.1|  416|Drosophila melanogaster LD44970p
           protein.
          Length = 416

 Score =  210 bits (512), Expect = 2e-54
 Identities = 100/169 (59%), Positives = 128/169 (75%), Gaps = 1/169 (0%)
 Frame = +3

Query: 210 SFKLINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRIID-SKLDTNALSGFK 386
           SF L  + ++ +    +  R+LNL E  SKDLL+KY V+IQ F++++ SK D   +  F+
Sbjct: 2   SFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNSKADAEVVKTFE 61

Query: 387 ADEYVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGIL 566
             EYVVKAQILAGGRGKG FDNGFKGGVH+T N+ +++ L + MIGN+LITKQTPK GIL
Sbjct: 62  CPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLSLTQQMIGNRLITKQTPKSGIL 121

Query: 567 VNKVMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIEAVAEKNP 713
           VNKVMVA S+NI RETY  I+++R  NG  ++ASPAGGMDIEAVAE+ P
Sbjct: 122 VNKVMVARSINITRETYLCILLDREHNGPVLIASPAGGMDIEAVAEETP 170


>AJ252069-1|CAB64384.1|  416|Drosophila melanogaster putative
           succinyl-coa ligase (GDP-forming) beta-chain precursor
           protein.
          Length = 416

 Score =  210 bits (512), Expect = 2e-54
 Identities = 100/169 (59%), Positives = 128/169 (75%), Gaps = 1/169 (0%)
 Frame = +3

Query: 210 SFKLINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRIID-SKLDTNALSGFK 386
           SF L  + ++ +    +  R+LNL E  SKDLL+KY V+IQ F++++ SK D   +  F+
Sbjct: 2   SFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNSKADAEVVKTFE 61

Query: 387 ADEYVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGIL 566
             EYVVKAQILAGGRGKG FDNGFKGGVH+T N+ +++ L + MIGN+LITKQTPK GIL
Sbjct: 62  CPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLSLTQQMIGNRLITKQTPKSGIL 121

Query: 567 VNKVMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIEAVAEKNP 713
           VNKVMVA S+NI RETY  I+++R  NG  ++ASPAGGMDIEAVAE+ P
Sbjct: 122 VNKVMVARSINITRETYLCILLDREHNGPVLIASPAGGMDIEAVAEETP 170


>AE014296-966|AAF50771.1|  416|Drosophila melanogaster CG10622-PA,
           isoform A protein.
          Length = 416

 Score =  210 bits (512), Expect = 2e-54
 Identities = 100/169 (59%), Positives = 128/169 (75%), Gaps = 1/169 (0%)
 Frame = +3

Query: 210 SFKLINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRIID-SKLDTNALSGFK 386
           SF L  + ++ +    +  R+LNL E  SKDLL+KY V+IQ F++++ SK D   +  F+
Sbjct: 2   SFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNSKADAEVVKTFE 61

Query: 387 ADEYVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGIL 566
             EYVVKAQILAGGRGKG FDNGFKGGVH+T N+ +++ L + MIGN+LITKQTPK GIL
Sbjct: 62  CPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLSLTQQMIGNRLITKQTPKSGIL 121

Query: 567 VNKVMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIEAVAEKNP 713
           VNKVMVA S+NI RETY  I+++R  NG  ++ASPAGGMDIEAVAE+ P
Sbjct: 122 VNKVMVARSINITRETYLCILLDREHNGPVLIASPAGGMDIEAVAEETP 170


>AY058331-1|AAL13560.1|  503|Drosophila melanogaster GH10480p
           protein.
          Length = 503

 Score =  130 bits (315), Expect = 2e-30
 Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
 Frame = +3

Query: 267 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNALSG-FKADEYVVKAQILAGGRGKGH 443
           R+LN+QEH S  LL + ++    F +  +  + N ++   K D  V+KAQ+LAGGRGKG 
Sbjct: 36  RNLNVQEHVSYSLLNEAKIPTPRFAVAKNGKEANDIATKLKTDNLVLKAQVLAGGRGKGT 95

Query: 444 FDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETYFS 623
           F NG KGGV +  +     +L+  MI   L+TKQT   G +  KVMVAE    +RE YF+
Sbjct: 96  FKNGLKGGVRVVYDPQTAEELSSKMIDQLLVTKQTGAAGRICKKVMVAERKFPRREFYFA 155

Query: 624 IVMERSFNGAAIVASPAGGMDIEAVAEKNP 713
           ++MER+FNG  ++AS  GG+DIE VA  +P
Sbjct: 156 VMMERAFNGPVLIASKEGGVDIEEVAASSP 185


>AE014297-840|AAF54308.2|  502|Drosophila melanogaster CG11963-PA
           protein.
          Length = 502

 Score =  130 bits (315), Expect = 2e-30
 Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
 Frame = +3

Query: 267 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNALSG-FKADEYVVKAQILAGGRGKGH 443
           R+LN+QEH S  LL + ++    F +  +  + N ++   K D  V+KAQ+LAGGRGKG 
Sbjct: 36  RNLNVQEHVSYSLLNEAKIPTPRFAVAKNGKEANDIATKLKTDNLVLKAQVLAGGRGKGT 95

Query: 444 FDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETYFS 623
           F NG KGGV +  +     +L+  MI   L+TKQT   G +  KVMVAE    +RE YF+
Sbjct: 96  FKNGLKGGVRVVYDPQTAEELSSKMIDQLLVTKQTGAAGRICKKVMVAERKFPRREFYFA 155

Query: 624 IVMERSFNGAAIVASPAGGMDIEAVAEKNP 713
           ++MER+FNG  ++AS  GG+DIE VA  +P
Sbjct: 156 VMMERAFNGPVLIASKEGGVDIEEVAASSP 185


>AE014296-967|AAN12099.1|  112|Drosophila melanogaster CG10622-PB,
           isoform B protein.
          Length = 112

 Score =  102 bits (244), Expect = 6e-22
 Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
 Frame = +3

Query: 210 SFKLINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRIID-SKLDTNALSGFK 386
           SF L  + ++ +    +  R+LNL E  SKDLL+KY V+IQ F++++ SK D   +  F+
Sbjct: 2   SFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNSKADAEVVKTFE 61

Query: 387 ADEYVVKAQILAGGRGKGHFDNGFKGGVHLT 479
             EYVVKAQILAGGRGKG FDNGFKGGVH+T
Sbjct: 62  CPEYVVKAQILAGGRGKGTFDNGFKGGVHIT 92


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,492,741
Number of Sequences: 53049
Number of extensions: 565606
Number of successful extensions: 1300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)