Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17j08f
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical pr...   165   3e-41
Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical pr...   126   2e-29
AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical
           protein C50F7.4 protein.
          Length = 415

 Score =  165 bits (401), Expect = 3e-41
 Identities = 83/152 (54%), Positives = 107/152 (70%), Gaps = 3/152 (1%)
 Frame = +3

Query: 267 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNAL-SGFKADEYVVKAQILAGGRGKGH 443
           R LNLQE  SK++L K+  S+Q+F +  ++ +       F   EYVVKAQILAGGRGKG 
Sbjct: 18  RFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHEYVVKAQILAGGRGKGK 77

Query: 444 FDNGFKG--GVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETY 617
           F NG KG  GV +TK +D  ++    MIG +L+TKQT  EG+ V+KVM+AE V+IKRETY
Sbjct: 78  FINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKVMIAEGVDIKRETY 137

Query: 618 FSIVMERSFNGAAIVASPAGGMDIEAVAEKNP 713
            +++M+R  NG  +VASP GGMDIEAVAEK P
Sbjct: 138 LAVLMDRESNGPVVVASPDGGMDIEAVAEKTP 169


>Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical
           protein F47B10.1 protein.
          Length = 435

 Score =  126 bits (303), Expect = 2e-29
 Identities = 66/166 (39%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
 Frame = +3

Query: 219 LINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRII-DSKLDTNALSGFKADE 395
           L+N +     P   + R L L EHH   +L+ Y++ +  F +  D++   +        +
Sbjct: 9   LLNTSQKFMAP---AARTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKD 65

Query: 396 YVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNK 575
           YVVKAQ+LAGGRGKG F +G +GGV +    D++   A  MIG  LITKQT   G    +
Sbjct: 66  YVVKAQVLAGGRGKGRFSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEE 125

Query: 576 VMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIEAVAEKNP 713
           VMV + +  +RE YFSI ++R+ NG  ++AS  GG++IE VA  NP
Sbjct: 126 VMVCKRLFTRREYYFSITLDRNTNGPIVIASSQGGVNIEEVAATNP 171


>AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical
           protein C35E7.5b protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 707 FFSHCLYIHTSSWRSYNGCTIKTSLHYNTKVCLSFDIHTFCDH 579
           F  +C +I      +YN      + +Y  K+  SF+ H  CDH
Sbjct: 736 FRVYCSHIKDVLINAYNSHAKSNAFYYYNKITGSFEEHVGCDH 778


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
           protein C35E7.5a protein.
          Length = 1262

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 707 FFSHCLYIHTSSWRSYNGCTIKTSLHYNTKVCLSFDIHTFCDH 579
           F  +C +I      +YN      + +Y  K+  SF+ H  CDH
Sbjct: 736 FRVYCSHIKDVLINAYNSHAKSNAFYYYNKITGSFEEHVGCDH 778


>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 628 TILKYVSLLIFTLSATITLFTKIPSLGVCLVISLFPIIF 512
           ++L YV L    L ++ TLF  IPS+ V L +S+  + F
Sbjct: 123 SVLLYVFLREKDLKSSWTLFYYIPSIAVSLFVSVLNVNF 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,640,022
Number of Sequences: 27780
Number of extensions: 306384
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)