Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17i22f
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    93   4e-20
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.54 
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    27   2.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.9  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    26   5.0  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   6.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   6.7  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   6.7  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.8  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    25   8.8  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 2/220 (0%)
 Frame = +2

Query: 101 TLNNVTRNTDLASQYVLPGESFPTFYDVSLFIDPANTVSFNGKVSIRIIPRIATNVIVVQ 280
           T+   T   D  ++ +LP    P  YD+SL+ D   T ++ GKV + +     +N I + 
Sbjct: 4   TIPKSTSKEDDKNRNLLPKNVKPIHYDLSLYPD-LETFTYGGKVVVTLDVLEDSNSITLH 62

Query: 281 AMEMTIRSISVFTDRSSNENLFASFTLATDDTHFLRISTRTQLLPDQPYIVNIDYESKYA 460
            + + I + ++      ++ ++AS     D+   L+  +      +   ++ + + ++ +
Sbjct: 63  GINLRILTAAL---EWGSQTVWASEVSYGDERIVLQFPSTVPA--NSVAVLTLPFTARIS 117

Query: 461 PNMFGVYVSTY-QQNGRTVNLVTSQLQPTFARRAFPCYDEPAIKAIFRTTIYAPAAYTVV 637
             M G Y S+Y   +G T  L T+Q++PT ARRAFPC+DEPA+KA F   I A   YT++
Sbjct: 118 SGMEGFYRSSYVDSDGNTKYLATTQMEPTSARRAFPCWDEPALKATFTIDITAKENYTIL 177

Query: 638 RH-NTPERAVPLKEDVAGYVKHEFEDTLVMSTYLLAYLVS 754
            + N  E  V  K+   G     F +T  MSTYLLA++V+
Sbjct: 178 SNMNAVEETV--KD---GLKTARFAETCRMSTYLLAWIVA 212


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 129 IWPPSMSYPENHSPRST--MSVYSLILPIPSVSTGRSASELSPGLQQMLSLS 278
           I PPS +   N SP  T   +V SLI   PSVS+  S+S  S  LQ    LS
Sbjct: 299 ISPPSANTVGNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNSNILS 350


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 328 APVSKNTNASNGHLHGLDNDNICCNPGDNSDADLPVETDGIG 203
           AP      ++   L GLDN+     P  N+ A L  E DG G
Sbjct: 266 APEQPKQESAMIDLLGLDNEPSPAQPQTNTSAPLAFEDDGFG 307


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/26 (30%), Positives = 20/26 (76%)
 Frame = -2

Query: 562 ECTAGKRWLKLRSYQIYSSSILLVCR 485
           +CT+G  +++LRS Q+  +++++ C+
Sbjct: 628 KCTSGPGYVQLRSGQLVGTALMIFCK 653


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 616 CVYGSSENSFDSRLIVARECTAGKRWLKLRSYQIYSSSILLVCRYI 479
           CV G+  ++ +  L        GKR L L +Y I S S + + RYI
Sbjct: 68  CVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQIERYI 113


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
 Frame = +2

Query: 35  TLDMYLLLITALLGSAYSF-----PTSTLNNVTRNTDLASQYV--LPGESFPTFYDVSLF 193
           T   +   +T+++ S  SF       + L+N + NTDL+SQ+       S  +  D S  
Sbjct: 14  TFRFFCYFLTSVVASDVSFLGDFSGFNVLSNSSANTDLSSQFFEQTNNGSLSSLIDTSYS 73

Query: 194 IDPANTVSFNGKVSIRIIPRIATNVIVVQAMEMTIRSISVFTDRSSNENLFASFTLATDD 373
                  S+ G + + ++      V++         S+ +F+  S N + F + +    D
Sbjct: 74  NSQICYSSWQGDLYVIVLDSEQQTVLLQSNFTSNPTSLEIFS--SQNTSFFGNISAIFCD 131

Query: 374 THFLRISTRTQLLPDQPYIVNI 439
             F   +  T    D+P   +I
Sbjct: 132 DKF-PYAYATFTFSDKPSFTSI 152


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 610 YGSSENSFDSRLIVARECTAGKRWLKLRSYQIYSSSILLVCRYIYS 473
           Y   E S  SRL++     + K+  KL  + I+   ++ VC+ +YS
Sbjct: 801 YSVKEFSHVSRLLLWHGRISYKQTSKLAMFVIHRGLLISVCQVVYS 846


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 371 DTHFLRISTRTQLLPDQPYIVNI 439
           DT FL++   T  LPD  Y+  +
Sbjct: 274 DTFFLKVPASTDKLPDPEYVARV 296


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 185 SLFIDPANTVSFNGKVSIRIIPRIATNVIVVQAM 286
           SL   P   VSF+G+ S+ I  ++    IVV+ M
Sbjct: 271 SLLSKPICDVSFDGQFSLYIAHQLILETIVVEVM 304


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +2

Query: 167 PTFYDVSLFIDPANTVSFNGKVSIRIIPRIATNVIVVQAMEMTIRSISVFTDRSSNENLF 346
           P FYD   F D    + F+ K S RI      + I+    E  I + +V  DR  +  +F
Sbjct: 87  PLFYDYYGFPDYLYQIKFHSKGSKRI-----ADQIISALKEYQIPAKTVSGDRGLDHGVF 141

Query: 347 ASFTLATDD 373
             F +   D
Sbjct: 142 VPFKIMFPD 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,144
Number of Sequences: 5004
Number of extensions: 74496
Number of successful extensions: 268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)