Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17i22f
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 96 2e-20
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 79 4e-15
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 79 5e-15
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 76 4e-14
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 36 0.046
10_01_0077 + 998506-998708,999141-999209,999287-999544,999790-99... 29 3.0
06_03_0774 + 24504964-24507459 29 4.0
02_03_0113 - 15381289-15381556,15381633-15381985,15382184-153822... 28 7.0
12_02_0082 - 13372997-13373863,13373928-13374386 28 9.2
05_02_0064 + 6267129-6267803 28 9.2
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 96.3 bits (229), Expect = 2e-20
Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 2/203 (0%)
Frame = +2
Query: 149 LPGESFPTFYDVSLFIDPANTVSFNGKVSIRIIPRIATNVIVVQAMEMTIRSISV-FTDR 325
LPG + P YD+ L D + +F G V + + T +V+ A E+ + V F
Sbjct: 17 LPGFAAPRRYDLRLVPD-LDGCAFTGSVDVSVDVTAPTRFLVLNAAELEVSPGGVQFKPH 75
Query: 326 SSNENLFASFTLATDDTHFLRISTRTQLLPDQPYIVNIDYESKYAPNMFGVYVSTYQQNG 505
+ + L + + L I ++LP + I ++ M G Y S Y+ NG
Sbjct: 76 GAEQELHPAEVTNVPEDEILIIRFN-EVLPVGEGTLVIAFKGTLNDKMHGFYRSVYELNG 134
Query: 506 RTVNLVTSQLQPTFARRAFPCYDEPAIKAIFRTTIYAPAAYTVVRHNTPERAVPLKEDVA 685
N+ +Q +P ARR FPC+DEP+ KAIF+ T+ P+ TV N P ++E V
Sbjct: 135 EKKNMAVTQFEPADARRCFPCWDEPSFKAIFKITLEVPSE-TVALSNMP----VVEEKVN 189
Query: 686 GYVKH-EFEDTLVMSTYLLAYLV 751
G +K F++T +MSTYL+A +V
Sbjct: 190 GLIKAVYFQETPIMSTYLVAVIV 212
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 79.0 bits (186), Expect = 4e-15
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 1/202 (0%)
Frame = +2
Query: 149 LPGESFPTFYDVSLFIDPANTVSFNGKVSIRIIPRIATNVIVVQAMEMTIRSISVFTDRS 328
LP + P YD+ L D A +F+G ++ + T +V+ A E+ + D S
Sbjct: 14 LPRCASPLSYDLRLRPDLA-ACAFSGSAAVAVAVSAPTRFLVLNAAELAV-------DGS 65
Query: 329 SNENLFASFTLATDDTHFLRISTRTQLLPDQPYIVNIDYESKYAPNMFGVYVSTYQQNGR 508
S+ L S + ++ + I Q LP ++ +D+ M G Y S Y+ G
Sbjct: 66 SD--LVPSEVVQFEEDEIVVIGFG-QDLPIGEGVLKMDFTGTLNDQMRGFYRSKYEYKGE 122
Query: 509 TVNLVTSQLQPTFARRAFPCYDEPAIKAIFRTTIYAPAAYTVVRHNTPERAVPLKEDVAG 688
+ N+ +Q + ARR FPC+DEPA KA F+ T+ P+ V N P +KE V G
Sbjct: 123 SRNMAVTQFEAADARRCFPCWDEPAFKAKFKLTLEVPSE-LVALSNMP----VIKETVHG 177
Query: 689 YVKH-EFEDTLVMSTYLLAYLV 751
+K +E++ +MSTYL+A +V
Sbjct: 178 PLKTVYYEESPLMSTYLVAIVV 199
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 78.6 bits (185), Expect = 5e-15
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 1/209 (0%)
Frame = +2
Query: 128 DLASQYVLPGESFPTFYDVSLFIDPANTVSFNGKVSIRIIPRIATNVIVVQAMEMTIRSI 307
+ Q LP + P Y++ L D A V F+G+ S+ + T +V+ A ++ +
Sbjct: 7 EFRGQARLPRFAAPRRYELRLRPDLAACV-FSGEASVAVDVSAPTRFLVLNAADLAVDRA 65
Query: 308 SVFTDRSSNENLFASFTLATDDTHFLRISTRTQLLPDQPYIVNIDYESKYAPNMFGVYVS 487
S+ + L + ++ L + +L P ++ + + M G Y S
Sbjct: 66 SI-----RFQGLAPAEVSVFEEDEILVLEFAGEL-PLGEGVLAMRFNGTLNDQMRGFYRS 119
Query: 488 TYQQNGRTVNLVTSQLQPTFARRAFPCYDEPAIKAIFRTTIYAPAAYTVVRHNTPERAVP 667
Y+ G T N+ +Q + ARR FPC+DEP+ KA F+ T+ P+ V N P
Sbjct: 120 KYEYKGETKNMAVTQFESVDARRCFPCWDEPSFKAKFKLTLEVPSE-LVALSNMP----I 174
Query: 668 LKEDVAGYVKH-EFEDTLVMSTYLLAYLV 751
+ E +AG +K E+E++ VMSTYL+A +V
Sbjct: 175 VNEKIAGPIKTVEYEESPVMSTYLVAIVV 203
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 75.8 bits (178), Expect = 4e-14
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 1/202 (0%)
Frame = +2
Query: 149 LPGESFPTFYDVSLFIDPANTVSFNGKVSIRIIPRIATNVIVVQAMEMTIRSISVFTDRS 328
LP + P Y++ L D + F G S+ + T +V+ A ++ + S+
Sbjct: 20 LPRFAAPRRYELRLRPD-LDACVFTGDASVVVDVSAPTRFLVLNAADLAVDRASI----- 73
Query: 329 SNENLFASFTLATDDTHFLRISTRTQLLPDQPYIVNIDYESKYAPNMFGVYVSTYQQNGR 508
+ L + +D L + +L P ++ +D+ M G Y S Y+ G
Sbjct: 74 RFQGLAPTEVSLFEDDEILVLEFDGEL-PLGEGVLAMDFNGTLNDQMRGFYRSKYEYKGE 132
Query: 509 TVNLVTSQLQPTFARRAFPCYDEPAIKAIFRTTIYAPAAYTVVRHNTPERAVPLKEDVAG 688
T N+ +Q + ARR FPC+DEPA KA F+ T+ P+ V N P E +AG
Sbjct: 133 TKNMAVTQFEAVDARRCFPCWDEPAFKAKFKLTLEVPSE-LVALSNMPVAC----ETIAG 187
Query: 689 YVKH-EFEDTLVMSTYLLAYLV 751
+K +E++ +MSTYL+A +V
Sbjct: 188 PIKTIHYEESPLMSTYLVAIVV 209
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 35.5 bits (78), Expect = 0.046
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 497 QNGRTVNLVTSQLQPTFARRAFPCYDEPAIKAIFRTTIYAP---AAYTVVRHNTPERAVP 667
Q ++ V SQ Q AR FPC+D PA + F + P +A RH R P
Sbjct: 118 QTASSLPFVFSQCQSIHARSVFPCHDTPAARITFDLLLNVPTQLSAVAAARH--VSRRDP 175
Query: 668 LKEDVAG 688
L D G
Sbjct: 176 LPSDHRG 182
>10_01_0077 +
998506-998708,999141-999209,999287-999544,999790-999868,
999972-1000064,1000147-1000174,1000223-1000227
Length = 244
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 440 DYESKYAPNMFGVYVSTYQQNGRTVNLVTSQLQPTFARRAFPCYDEP 580
D E YAP F + YQQ G+ + F R +PC+ +P
Sbjct: 166 DKECVYAPYAFDAFKRYYQQGGQR----KKSRERIFVRNKWPCHKQP 208
>06_03_0774 + 24504964-24507459
Length = 831
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 743 RRAGTSTLRGCLQTRASRNPPRPPSMGQL 657
R+ + T + ++ R SR+PP PPS G++
Sbjct: 435 RQERSVTQKALIKVRTSRSPPAPPSRGRV 463
>02_03_0113 -
15381289-15381556,15381633-15381985,15382184-15382231,
15382260-15382439,15382835-15382954
Length = 322
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 575 EPAIKAIFRTTIYAPAAYTVVRHNTPERAVPLKEDVAGYVKHEFEDTLVMSTYLLAYL 748
EP+I F + P AY+ + + ERA LK++VA + + D+L +L+ L
Sbjct: 19 EPSIWGDFFLSYCNPLAYSDNQRSMEERAEYLKKEVAKLIVNSRTDSLPEKLHLIDVL 76
>12_02_0082 - 13372997-13373863,13373928-13374386
Length = 441
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 533 LQPTFARRAFPCYDEPAIKAIFRTTIYAPAAYTVVRHNTPERAVPL--KEDVAGYVKHEF 706
+ PT +P +D + T+ + AY+++RH ER K A V+ E
Sbjct: 248 MPPTLPITEYPRFDVFGMSQSMATSPHVEGAYSLIRHPLAERVASYDRKAKEAHDVQKEL 307
Query: 707 EDTL 718
+D L
Sbjct: 308 DDAL 311
>05_02_0064 + 6267129-6267803
Length = 224
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 746 DRRAGTSTLRGCLQTRASRNPPRPP 672
+R AG + GC++ ASR PP PP
Sbjct: 61 ERVAGDDGVPGCVRYVASRPPPPPP 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,796,639
Number of Sequences: 37544
Number of extensions: 490633
Number of successful extensions: 1356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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