Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17i09f
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    29   0.79 
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   4.2  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    26   5.6  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    26   5.6  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   9.7  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   9.7  

>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 307 FRYFSAFLNKFIGLLGHARKTPVKFYPRKIF 215
           F YF+  +   +G+LGH  KT + F+  +IF
Sbjct: 288 FCYFAGMVMAVVGILGHFSKTLMLFFIPQIF 318


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 564 SSGMVMSLYNSFSILLPCSRLYIKKCA 484
           +SG+ M LY+ F +  P + + + +CA
Sbjct: 58  TSGLAMLLYSRFQLFFPVNEIPLLECA 84


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 413 PIDRLKRNISE-TYPIIHERVLLLMAHFLIYKREHG 517
           P+D  +RN SE +     ER+ + +AH +++ R+ G
Sbjct: 96  PVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAG 131


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 497 IYKREHGSSIEKELYRDMTIPELIDRLLLKRAVSFMGAR 613
           I+ +E    +EK+    + +P      +LKRA+S +G R
Sbjct: 25  IFLKEDTEDVEKKSLYLINVPITTTEKILKRAISQLGGR 63


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +2

Query: 464 ERVLLLMAHFLIYKREHGSSIEKELYRDMTIPELIDRLLLKRAVSF 601
           +RVL   A+ L YKR+  SS + +L  + T+ +  ++   +R +SF
Sbjct: 414 DRVLNQQAYILQYKRKSTSSSKHKLNTENTVTKTSNK--KRRKISF 457


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 560 LVWSCLCIILSLYYCHVHVYILKSVPSATRPSRV**DMS 444
           L+ + L I+ SLYYC  H     + P    PS +  DM+
Sbjct: 542 LILTFLGIVASLYYCFAHGLQFINWPRLLLPSFLRSDMT 580


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 509  EHGSSIEKELYRDMTIPELIDRLLLKRAVS 598
            E G  IEKE+Y D+T  + I    L+R +S
Sbjct: 1079 ELGEKIEKEVYCDLTQRQKILYQALRRQIS 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,881
Number of Sequences: 5004
Number of extensions: 58277
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)