Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17i09f
(662 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 27 0.16
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 27 0.16
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 27 0.16
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 4.5
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 22 6.0
DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein p... 22 6.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 7.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 7.9
AF388659-3|AAK71993.1| 548|Apis mellifera 1D-myo-inositol-trisp... 21 7.9
AF388659-2|AAK71994.1| 463|Apis mellifera 1D-myo-inositol-trisp... 21 7.9
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 21 7.9
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 27.1 bits (57), Expect = 0.16
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3
Query: 291 ALKYLKLNQTLKLMKLLREARIFLYLSRF 377
AL+ L+L + L L++LLR +R+ Y+S++
Sbjct: 204 ALRILRLAKLLSLVRLLRLSRLVRYVSQW 232
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 27.1 bits (57), Expect = 0.16
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3
Query: 291 ALKYLKLNQTLKLMKLLREARIFLYLSRF 377
AL+ L+L + L L++LLR +R+ Y+S++
Sbjct: 204 ALRILRLAKLLSLVRLLRLSRLVRYVSQW 232
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 27.1 bits (57), Expect = 0.16
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3
Query: 291 ALKYLKLNQTLKLMKLLREARIFLYLSRF 377
AL+ L+L + L L++LLR +R+ Y+S++
Sbjct: 204 ALRILRLAKLLSLVRLLRLSRLVRYVSQW 232
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 570 SISSGMVMSLYNSFSILLPCSRLYIKKCAISN 475
++ +GMV+ ++ S L S L++ AISN
Sbjct: 67 AMGNGMVVYIFLSTKSLRTPSNLFVINLAISN 98
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 542 CIILSLYYCHVHVYILKSVPS 480
CI++ YC ++ Y K V S
Sbjct: 205 CIVMLGIYCRLYCYAQKHVKS 225
>DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein
protein.
Length = 430
Score = 21.8 bits (44), Expect = 6.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 203 AKLLEDLPWIKLDWCFPSMTQETNELIQ 286
A LLE W LD+ +P +T +++
Sbjct: 32 APLLERFFWRTLDYAYPDEASKTMAMMK 59
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 188 FKMDLAKLLEDLPWIKLDWCFPSM 259
F + K+LED +K DW + +M
Sbjct: 493 FIAEHTKMLEDSTKVKEDWKYVAM 516
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 188 FKMDLAKLLEDLPWIKLDWCFPSM 259
F + K+LED +K DW + +M
Sbjct: 493 FIAEHTKMLEDSTKVKEDWKYVAM 516
>AF388659-3|AAK71993.1| 548|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
Length = 548
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -3
Query: 264 WVMLGKHQSSFIQGRSSNNFAKSI 193
WV L HQ +F G + K +
Sbjct: 242 WVQLAGHQGNFRAGPTPGTILKKL 265
>AF388659-2|AAK71994.1| 463|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
Length = 463
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -3
Query: 264 WVMLGKHQSSFIQGRSSNNFAKSI 193
WV L HQ +F G + K +
Sbjct: 157 WVQLAGHQGNFRAGPTPGTILKKL 180
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -3
Query: 264 WVMLGKHQSSFIQGRSSNNFAKSI 193
WV L HQ +F G + K +
Sbjct: 476 WVQLAGHQGNFRAGPTPGTILKKL 499
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,049
Number of Sequences: 438
Number of extensions: 4327
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -