Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17i06r
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   2.2  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   8.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 794 NSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPV 678
           N+N Y N       N    + +   I++ Q+ V VP+P+
Sbjct: 334 NNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPVPVPVPI 372


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 683 PVPLSMFSFSGTRGSFLGTNHFCGKQGLDFYTEL 582
           P+     + SGTR  F+     C K G+  Y ++
Sbjct: 82  PISYKWITRSGTREQFIDMVARCNKAGVRIYVDV 115


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 713 VGQVGVNVPIPVPLSMFSF 657
           + Q+ V VPIPVP+   +F
Sbjct: 108 IEQIPVPVPIPVPVYYGNF 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,006
Number of Sequences: 438
Number of extensions: 4783
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)