Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17i05f
(699 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT030308-1|ABN49447.1| 693|Drosophila melanogaster RE02357p pro... 103 3e-22
BT012335-1|AAS77460.1| 410|Drosophila melanogaster AT15134p pro... 103 3e-22
AE014296-2119|AAS65016.1| 750|Drosophila melanogaster CG5620-PB... 103 3e-22
AE014296-2118|AAF49939.2| 750|Drosophila melanogaster CG5620-PA... 103 3e-22
AY113435-1|AAM29440.1| 482|Drosophila melanogaster RE26538p pro... 31 1.1
AE014297-3029|AAF55911.2| 968|Drosophila melanogaster CG5849-PA... 31 1.1
BT022137-1|AAY51532.1| 388|Drosophila melanogaster IP01552p pro... 29 4.6
AE014296-2362|AAF49756.1| 388|Drosophila melanogaster CG7345-PA... 29 4.6
AF233659-1|AAF42939.1| 1530|Drosophila melanogaster RECQ4 protein. 29 8.0
>BT030308-1|ABN49447.1| 693|Drosophila melanogaster RE02357p
protein.
Length = 693
Score = 103 bits (246), Expect = 3e-22
Identities = 47/88 (53%), Positives = 58/88 (65%)
Frame = +2
Query: 347 SRRVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRVSA 526
++RVTRKWE+FAGRN+F+CDG LM+APH GVF LT LI GT AL FAFDCPFLA ++
Sbjct: 15 NQRVTRKWELFAGRNKFYCDGLLMSAPHTGVFYLTCILITGTSALFFAFDCPFLADSINP 74
Query: 527 AVPXXXXXXXXXXXXXXXXXXXSDPGII 610
A+P +DPG+I
Sbjct: 75 AIPIVGAVLYFFTMSSLLRTTFTDPGVI 102
>BT012335-1|AAS77460.1| 410|Drosophila melanogaster AT15134p
protein.
Length = 410
Score = 103 bits (246), Expect = 3e-22
Identities = 47/88 (53%), Positives = 58/88 (65%)
Frame = +2
Query: 347 SRRVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRVSA 526
++RVTRKWE+FAGRN+F+CDG LM+APH GVF LT LI GT AL FAFDCPFLA ++
Sbjct: 27 NQRVTRKWELFAGRNKFYCDGLLMSAPHTGVFYLTCILITGTSALFFAFDCPFLADSINP 86
Query: 527 AVPXXXXXXXXXXXXXXXXXXXSDPGII 610
A+P +DPG+I
Sbjct: 87 AIPIVGAVLYFFTMSSLLRTTFTDPGVI 114
>AE014296-2119|AAS65016.1| 750|Drosophila melanogaster CG5620-PB,
isoform B protein.
Length = 750
Score = 103 bits (246), Expect = 3e-22
Identities = 47/88 (53%), Positives = 58/88 (65%)
Frame = +2
Query: 347 SRRVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRVSA 526
++RVTRKWE+FAGRN+F+CDG LM+APH GVF LT LI GT AL FAFDCPFLA ++
Sbjct: 15 NQRVTRKWELFAGRNKFYCDGLLMSAPHTGVFYLTCILITGTSALFFAFDCPFLADSINP 74
Query: 527 AVPXXXXXXXXXXXXXXXXXXXSDPGII 610
A+P +DPG+I
Sbjct: 75 AIPIVGAVLYFFTMSSLLRTTFTDPGVI 102
>AE014296-2118|AAF49939.2| 750|Drosophila melanogaster CG5620-PA,
isoform A protein.
Length = 750
Score = 103 bits (246), Expect = 3e-22
Identities = 47/88 (53%), Positives = 58/88 (65%)
Frame = +2
Query: 347 SRRVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRVSA 526
++RVTRKWE+FAGRN+F+CDG LM+APH GVF LT LI GT AL FAFDCPFLA ++
Sbjct: 15 NQRVTRKWELFAGRNKFYCDGLLMSAPHTGVFYLTCILITGTSALFFAFDCPFLADSINP 74
Query: 527 AVPXXXXXXXXXXXXXXXXXXXSDPGII 610
A+P +DPG+I
Sbjct: 75 AIPIVGAVLYFFTMSSLLRTTFTDPGVI 102
>AY113435-1|AAM29440.1| 482|Drosophila melanogaster RE26538p
protein.
Length = 482
Score = 31.5 bits (68), Expect = 1.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 216 EDTLYLVHSYRATLLHRDILWQY 284
ED +YL++ Y++ L R ++WQY
Sbjct: 325 EDLMYLLYIYKSNLASRPVIWQY 347
>AE014297-3029|AAF55911.2| 968|Drosophila melanogaster CG5849-PA
protein.
Length = 968
Score = 31.5 bits (68), Expect = 1.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 216 EDTLYLVHSYRATLLHRDILWQY 284
ED +YL++ Y++ L R ++WQY
Sbjct: 811 EDLMYLLYIYKSNLASRPVIWQY 833
>BT022137-1|AAY51532.1| 388|Drosophila melanogaster IP01552p
protein.
Length = 388
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 412 PPVAPEPVSPREHFPLARHAPRRHRTMSCRSHS 314
PP AP PV+P+ H H H + S+S
Sbjct: 77 PPAAPTPVAPKMHQHTHHHGNSHHNAPTSHSNS 109
>AE014296-2362|AAF49756.1| 388|Drosophila melanogaster CG7345-PA
protein.
Length = 388
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 412 PPVAPEPVSPREHFPLARHAPRRHRTMSCRSHS 314
PP AP PV+P+ H H H + S+S
Sbjct: 77 PPAAPTPVAPKMHQHTHHHGNSHHNAPTSHSNS 109
>AF233659-1|AAF42939.1| 1530|Drosophila melanogaster RECQ4 protein.
Length = 1530
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 484 VQRARAADERQCEQEDAGVRCSHEPPVAPEPVSPREHFP 368
+++ AA+E Q G+ S +PP P+PV + P
Sbjct: 102 IRKFEAAEELPINQNAWGLNVSKKPPAPPQPVEASKSAP 140
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,119,156
Number of Sequences: 53049
Number of extensions: 466395
Number of successful extensions: 1762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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