Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17i01r
         (960 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   9.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   9.5  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   9.5  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 642 FYHVCVKSLIGQWSN*LRFI 583
           F  +C+  LIG WS  L+F+
Sbjct: 280 FNLICMMLLIGHWSGCLQFL 299


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 642 FYHVCVKSLIGQWSN*LRFI 583
           F  +C+  LIG WS  L+F+
Sbjct: 248 FNLICMMLLIGHWSGCLQFL 267


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 398 IFVNTIGNFSNLTLVKPV 451
           IF N I  F N+ LVK V
Sbjct: 2   IFTNNIAAFQNVVLVKKV 19


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 899 HQNSSTAKSMTAVR*PCKRSD 837
           HQNS+  KS+  +    +RSD
Sbjct: 234 HQNSNVPKSVAGLNVSSRRSD 254


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 169 ERLQRLYVYW--ENIKKSYDYFYIFIT 95
           ++L++    W  +NI   +DY+YI+ T
Sbjct: 154 DKLKKKLEEWTGKNITTPWDYYYIYHT 180


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 169 ERLQRLYVYW--ENIKKSYDYFYIFIT 95
           ++L++    W  +NI   +DY+YI+ T
Sbjct: 169 DKLKKKLEEWTGKNITTPWDYYYIYHT 195


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 169 ERLQRLYVYW--ENIKKSYDYFYIFIT 95
           ++L++    W  +NI   +DY+YI+ T
Sbjct: 57  DKLKKKLEEWTGKNITTPWDYYYIYHT 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,954
Number of Sequences: 438
Number of extensions: 4091
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)