Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17i01f
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...   161   1e-40
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    26   5.3  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    26   7.0  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score =  161 bits (390), Expect = 1e-40
 Identities = 77/154 (50%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
 Frame = +1

Query: 7   LGLYGGVAYSAFSTLV-RGKEPWTLSHGGADHSRLRPAQECQPIEYPKPDGVVTFDLLSS 183
           LG YGG+AYSA    V +G+ PWTL H G D    + A + +PI YPKPD V++FD+ +S
Sbjct: 477 LGNYGGMAYSAVEAYVLKGRVPWTLKHKGGDAKATKSASKYKPINYPKPDNVLSFDIPTS 536

Query: 184 VALTGTNHEADQPPHLTLKDDTVPVKTNLGVYDGPEARFCPAGVYEFVPLEEGD-GQRLQ 360
           V+ + T H  +QP HL         K+    Y G E +FCPAGVYE+V  E    G+R  
Sbjct: 537 VSRSATMHAENQPCHL-FDHRPKDRKSCFETYKGVENKFCPAGVYEYVNDEASSYGKRFV 595

Query: 361 INAQNCIHCKTCDIKDPSQNINWVVPEGGGGPAY 462
           IN+QNC+HCKTCDIKDP Q I W  P+GG GP Y
Sbjct: 596 INSQNCVHCKTCDIKDPLQGIQWKTPQGGDGPKY 629


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 325 RTRIHLQDKTWLRVHRILLDWS*PAPYRLLTSDAEAGP 212
           +T I +QD T  R++    DWS     R+ + + + GP
Sbjct: 467 KTAIRIQDSTGKRINNYAFDWS-----RMTSFEGDTGP 499


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 308 AGQNLASGPSYTPRLVLTGTVSSFNVRCGGWSAS*FVPVSATEDSRSKV 162
           +  ++    S  PRL +T  V     + G WS   ++ +S  + S S V
Sbjct: 34  SSSSIPPSSSPPPRLTITQRVKELTKKYGWWSLGVYIGISVLDFSASFV 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,933
Number of Sequences: 5004
Number of extensions: 67730
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)