Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17i01f
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904...   196   2e-50
08_02_0301 - 15503184-15504773,15504790-15504873                       34   0.11 
02_03_0246 - 16807619-16808145,16808208-16808868                       31   1.4  
10_07_0122 - 13079268-13079801                                         29   4.2  
02_02_0405 + 9885202-9885415,9885515-9885861,9885941-9886516,988...    29   4.2  
12_02_0421 + 18932512-18932608,18932669-18932725,18932801-189328...    29   5.5  
05_03_0229 - 10675643-10675810,10676314-10676419,10676684-106767...    29   5.5  
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680...    28   7.3  
09_04_0519 - 18276797-18276874,18277214-18277419,18277527-182776...    28   7.3  
05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211...    28   7.3  
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536...    28   7.3  
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440...    28   7.3  
01_07_0037 + 40657449-40658010,40658567-40658901                       28   7.3  
10_01_0001 - 22485-22526,23308-23436,24346-24473,24801-24862,253...    28   9.7  
05_06_0048 + 25168115-25168238,25178910-25179511                       28   9.7  
05_04_0128 - 18281753-18282166                                         28   9.7  
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    28   9.7  

>10_08_0628 +
           19389508-19389637,19389774-19389850,19390332-19390438,
           19390545-19390626,19390702-19390814,19391023-19391086,
           19391192-19391266,19391691-19391807,19392131-19392199,
           19392319-19392411,19392733-19392835,19393040-19393164,
           19393317-19393366,19393477-19393543,19393663-19393742,
           19394038-19394166,19394274-19394340,19394429-19394512
          Length = 543

 Score =  196 bits (477), Expect = 2e-50
 Identities = 89/155 (57%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
 Frame = +1

Query: 10  GLYGGVAYSAFSTLV-RGKEPWTLSHGGADHSRLRPAQECQPIEYPKPDGVVTFDLLSSV 186
           G   G+A SA    V +GK P+TL HG  DH     A    PI+YPKPDG ++FD+ +S+
Sbjct: 390 GFIPGIALSALERYVFKGKSPFTLKHGIPDHEATDMASLHSPIQYPKPDGQISFDVPTSL 449

Query: 187 ALTGTNHEADQPPHLTLKDDTVPVKTNLGVYDGPEARFCPAGVYEFVPLEEGDGQRLQIN 366
             + TNHE DQPPHL L+D TVP + NL +Y GPE+ +CPA VYE+V  E+GD Q+L IN
Sbjct: 450 YRSSTNHEHDQPPHLRLRDPTVPERVNLPLYAGPESHYCPARVYEYVTDEKGD-QKLHIN 508

Query: 367 AQNCIHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 471
           AQNC+HCK CDIKDP QNI W VPEGGGGP Y  M
Sbjct: 509 AQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTVM 543


>08_02_0301 - 15503184-15504773,15504790-15504873
          Length = 557

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
 Frame = +3

Query: 93  RSLTPAAGAGVPTHRVPQAGRG-GYLRSAVLCCAH---RHKSRSGPASASDVKRRYGAG* 260
           R   PAAGA VP        RG   L SAVLC  H   R + RSG  S   +    G G 
Sbjct: 71  RFALPAAGA-VPRPAAVVLPRGRSELTSAVLCARHASLRIRVRSGAHSYEGLSYTVGDGG 129

Query: 261 DQSRSIRWTRSQVLSCRCIRVRTVGGG*WSEVADQCSELH 380
           D +  +R+    +     +RV       W E      E++
Sbjct: 130 DDADRVRFVVIDLTRMNRVRVDAASATAWVESGATLGEIY 169


>02_03_0246 - 16807619-16808145,16808208-16808868
          Length = 395

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 5   SWACTEASRTPPSARSCAGRNPGPSATEVQITHACGRRR-SANPSSTPSRT 154
           SW      R P  +RSC            +    CGRRR +A+PS++P  T
Sbjct: 86  SWPRMTRGRLPGLSRSCRSSRMAARCWPCRPPCCCGRRRRAASPSASPCTT 136


>10_07_0122 - 13079268-13079801
          Length = 177

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 191 SATEDSRSKVTTPSGLGYSMGWH-SCAGRRRE*SAPPWLRVQGSFPRTS 48
           SA ED  S +   +G GY  GW   C G+ R     P  R+ G  PRT+
Sbjct: 62  SAAEDEDSGMEASNGNGYERGWQDGCEGQGRR----PQARMAGR-PRTT 105


>02_02_0405 +
           9885202-9885415,9885515-9885861,9885941-9886516,
           9886599-9887003
          Length = 513

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 601 LKRHVLLENSSKIFNSEEHDCGSLTMQTI*LKKPHFNFS 717
           L+RH L +NS++      HD  S +  T  + +PH N S
Sbjct: 5   LRRHSLDKNSAQFHRQLSHDSSSSSSDTADMHEPHGNGS 43


>12_02_0421 +
           18932512-18932608,18932669-18932725,18932801-18932851,
           18933068-18933156
          Length = 97

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 433 VPEGGGGPAYNGM*IDTKYSLNP 501
           VP GGGGP YNG  I   Y L+P
Sbjct: 31  VPGGGGGPLYNGADI---YGLHP 50


>05_03_0229 -
           10675643-10675810,10676314-10676419,10676684-10676730,
           10676774-10676806
          Length = 117

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/96 (23%), Positives = 38/96 (39%)
 Frame = -3

Query: 296 LASGPSYTPRLVLTGTVSSFNVRCGGWSAS*FVPVSATEDSRSKVTTPSGLGYSMGWHSC 117
           +  GP      +L  TV+ +N  CG   A   VP++AT  S   +  P+ + +   W+  
Sbjct: 4   IVGGPEINEYFILVITVTVYNFHCGDTDA--VVPLTATRYSIDALGLPTTVSW-YPWYDA 60

Query: 116 AGRRRE*SAPPWLRVQGSFPRTSVLKAEYATPPYRP 9
                      W +V       +V  A +  P +RP
Sbjct: 61  M------KVGGWSQVYKGLSLVTVRGAGHEVPLHRP 90


>09_06_0205 -
           21567467-21567655,21567791-21567876,21567965-21568037,
           21568267-21568326,21568887-21568935,21569328-21569431,
           21569587-21569640,21569719-21569763,21569817-21569879,
           21570415-21570615,21570620-21570797,21570900-21570993,
           21571075-21572478,21572560-21572604,21572710-21572788,
           21573424-21573589,21573679-21573771,21573872-21573929,
           21574063-21574120,21574210-21574367,21575130-21575177,
           21575269-21575320,21575404-21575529
          Length = 1160

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 194 VSATEDSRSKVTTPSGLGYSMGWHSCAGRRRE*SAPPWLRVQGSFPR 54
           VS ++ ++S   T    G S       GR R  SAPP+ R +  FPR
Sbjct: 694 VSFSQVAKSSKLTEDQYGCSQRPRLSRGRYRSRSAPPFYRGKRKFPR 740


>09_04_0519 -
           18276797-18276874,18277214-18277419,18277527-18277683,
           18278069-18278454,18279291-18279317,18279609-18279720
          Length = 321

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
 Frame = +2

Query: 11  ACTEASRTPPSARSCAGRNPGPSATEVQITHACGRRRSANPS------STPSRTGWLPSI 172
           A   A+ +  +A + A  +PG             RRR  +PS      +TP    WL S 
Sbjct: 96  AVRHAASSSSAAEAAADGSPGALLRRKVAERERARRRPRDPSRDEFFVATPESLAWLDSA 155

Query: 173 CCPLLRSQAQITKRTSL 223
             P++ + A I   T L
Sbjct: 156 SLPMVLTAAAIALFTKL 172


>05_07_0291 -
           29020032-29020660,29020747-29020817,29021020-29021194,
           29021451-29021571,29021686-29022036
          Length = 448

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 114 GAGVPTHRVPQAGRGGYLRSAVLCCAHRHKSRSGPASASDVKRRYGAG*DQSR 272
           G GV  H    +GRGG++R+  +     + +R G   A DV     A  D S+
Sbjct: 315 GMGVGIHVKTNSGRGGFIRNITVSEVTLNGARYGLRIAGDVGGHPDASYDPSK 367


>03_02_1033 +
           13550955-13551700,13552837-13553290,13553451-13553648,
           13553726-13553807,13554496-13554590
          Length = 524

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 311 PAGQNLASGPSYTPRLVLTGTVSSFNVRCGGWSAS*FVPVSATEDSRSKVTT 156
           PA ++L S   + P+       SS++ +   WSA  + P+ +     SKVT+
Sbjct: 437 PAHKSLISHVKFEPQEGYYLATSSYDTKAALWSARDYKPIKSLVAHESKVTS 488


>03_02_1031 +
           13541327-13542072,13543209-13543662,13543823-13544020,
           13544098-13544179,13544868-13544962
          Length = 524

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 311 PAGQNLASGPSYTPRLVLTGTVSSFNVRCGGWSAS*FVPVSATEDSRSKVTT 156
           PA ++L S   + P+       SS++ +   WSA  + P+ +     SKVT+
Sbjct: 437 PAHKSLISHVKFEPQEGYYLATSSYDTKAALWSARDYKPIKSLVAHESKVTS 488


>01_07_0037 + 40657449-40658010,40658567-40658901
          Length = 298

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 102 TPAAGAGVPTHRVPQAGRGGYLRSAVLCCAHRHKSRSGPASASDVKRRYGA 254
           +PAAGAG P  R+P+  R     + VL  A R     G  S   V+ ++ A
Sbjct: 9   SPAAGAGTPRSRLPRWTRH---ETLVLLQARRAMEHRGRRSPQPVRLKWAA 56


>10_01_0001 -
           22485-22526,23308-23436,24346-24473,24801-24862,
           25388-25585,25807-25898,26941-26994
          Length = 234

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +2

Query: 5   SWACTEASRTP---PSARSCAGRNPGPSATEVQI--THACGRRRSANPSSTPSRT 154
           SWACT  S+     P A   A   P  S++       + CGR     P S+PS T
Sbjct: 8   SWACTGGSQEAICGPEASKLAIAVPTISSSSCSYFYRYRCGRYEELKPPSSPSPT 62


>05_06_0048 + 25168115-25168238,25178910-25179511
          Length = 241

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 93  RSLTPAAGAGVPTHRVPQAGRGGYLRSAVLCCAHRHKSRSG 215
           R ++  AG  +PTH     GRGG+   A+       +SR G
Sbjct: 96  RKMSACAGH-MPTHAAGAMGRGGFAPGAMQAATFSSRSRRG 135


>05_04_0128 - 18281753-18282166
          Length = 137

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
 Frame = -3

Query: 308 AGQNLASGPSYTPRLVLTGTVSSFNVRCGGWSAS*FVPVSATEDSRSKVTTPSGLGYSM- 132
           AG N  S P  TP      + SS N +  GWS     P+        +  TPS +   + 
Sbjct: 12  AGGN-RSPPPPTPGQQEEASSSSKNSKVAGWSKEEDDPIIGGGGGEKEEPTPSPVCLPLF 70

Query: 131 ----GWHSCAGRRRE*SAPPWLRVQGSFPRTSVLKAEYATPPYR 12
               G+H     +    APP L V   FP    L     TP  R
Sbjct: 71  PLTPGFHHQKQAQAPAQAPPPLAVTPGFPTPEFLILFPLTPGLR 114


>01_01_1220 +
           9862195-9862281,9862427-9862646,9862764-9862916,
           9863016-9863674,9863749-9863852,9863950-9864192,
           9864262-9864376,9864696-9864909,9864995-9865511,
           9866439-9866448,9867363-9867551,9867755-9868084,
           9868639-9868872,9869303-9869743
          Length = 1171

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 56  AGRNPGPSATEVQITHACGRRRSANPSSTPSRTGWLPSICCPLLRSQAQITKRTSL 223
           AG+NP P A +   + AC     A      +  GW PS+    L + A  T R +L
Sbjct: 552 AGKNPSPFAIKSGTSMACPHVAGAAAFVKSAHPGWSPSMIRSALMTTA--TTRNNL 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,063,952
Number of Sequences: 37544
Number of extensions: 558647
Number of successful extensions: 1826
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)