Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17i01f
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein...   239   2e-63
U80840-6|AAB37934.1|  317|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    29   2.9  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead transc...    29   3.8  
AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical...    29   3.8  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein
           721 protein.
          Length = 597

 Score =  239 bits (584), Expect = 2e-63
 Identities = 108/159 (67%), Positives = 122/159 (76%), Gaps = 2/159 (1%)
 Frame = +1

Query: 1   TKLGLYGGVAYSA-FSTLVRGKEPWTLSHGGADHSRLRPAQECQPIEYPKPDGVVTFDLL 177
           T LG  GG+ YS  F    RG EPWTL HG  D+ +L P ++ + I+YPKPDG +TFDLL
Sbjct: 439 TSLGYIGGLIYSGIFYVFGRGIEPWTLGHGKKDNEKLIPVKDAKEIDYPKPDGKLTFDLL 498

Query: 178 SSVALTGTNHEADQPPHLTLKDDTVPVKTNLGVYDGPEARFCPAGVYEFVPLEEGDG-QR 354
           +SV+LTGTNH  DQP HLTLK+D VP+  NL VY GPEARFCPAGVYEFVP E  +  +R
Sbjct: 499 TSVSLTGTNHTEDQPAHLTLKNDQVPLDVNLAVYGGPEARFCPAGVYEFVPSEADESKKR 558

Query: 355 LQINAQNCIHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 471
           LQINAQNCIHCKTCDIKDP QNINWV PEGGGGP Y GM
Sbjct: 559 LQINAQNCIHCKTCDIKDPQQNINWVTPEGGGGPKYEGM 597


>U80840-6|AAB37934.1|  317|Caenorhabditis elegans Hypothetical
           protein F08D12.11 protein.
          Length = 317

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 417 LRRVFNVARFTVDAVLSIDLQPLTITLLQRYELVYTCRTKPGFGSIV 277
           L  V N   +T+ A L+ D+Q + I   +  EL  T  T P  GSI+
Sbjct: 265 LEAVLNDIDYTISAELAEDIQTVVIPRYRLSELFLTYTTPPNMGSIL 311


>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
           protein Y116A8C.36 protein.
          Length = 1097

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -2

Query: 477 NLHSVVGRSAAALGHNPVDVLRRVFNVARFTVDAVLSIDLQPLTITLLQRYE 322
           +L S VGRSA  L   P +VL  ++ ++    D  LS+D   ++  +++ ++
Sbjct: 194 SLSSQVGRSALGLSGLPTNVLAHIWFLSDVNKDGKLSVDEYAISQYMIEMFK 245


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = -3

Query: 338 SSNGTNSYTPAGQNLASGP-SYTPRLVLTGTVSSFNVRCGGWSAS*FVPVSATEDSRSKV 162
           SSN + SYTP+       P SYTP +       + N    G + S    +S++   RS++
Sbjct: 22  SSNYSRSYTPSFNTFKYSPSSYTPNI-----SRNLNTTSTGSTTSDTPKLSSSSAPRSRL 76

Query: 161 --TTPSGLGYSMGWHSCAGRRRE*SAPPWLRVQGS 63
             TTPS    ++   S    +   S+P   RV  S
Sbjct: 77  SFTTPSSTSTNLPRTSITSHKTLYSSPAAARVSVS 111


>U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 2, isoform a protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 301 CPAGVYEFVPLEEGDGQRLQINAQNCIHCKTCDIKDPSQNIN 426
           CP  V E V +E+     L I+ Q CI  ++ DI DPS +I+
Sbjct: 10  CPDLVEEAVKIEQ-----LHISTQPCIKQESTDISDPSTSID 46


>AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical
           protein Y48G1C.7 protein.
          Length = 623

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 169 DLLSSVALTGTNHEADQPPHLTLKDDTV 252
           D+L  V +   NH  D PPH  L++D +
Sbjct: 569 DVLEQVVVEEPNHHDDHPPHELLEEDAL 596


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 341 PSSNGTNSYTPAGQNLASGPSYTPRLVLTGTVS 243
           P+S    S T  G +  S  SYTPR V  G+VS
Sbjct: 57  PTSYRAGSITSGGNSSNSTSSYTPRNVRAGSVS 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,593,747
Number of Sequences: 27780
Number of extensions: 428105
Number of successful extensions: 1189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)