Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17i01f
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.60 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.8  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 395 HVLQWMQF*ALICNL*PSPSSNGTNSYTPAGQNLASGPSYTPRLVL 258
           HV    Q+ +++     SP  NG  +Y+   +NLA+  S+T RLV+
Sbjct: 659 HVTNMDQYNSILMIEHLSPDHNG--NYSCVARNLAAEVSHTQRLVV 702


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 329 GTNSYTPAGQNLASGPSYTPRLVLTGTVSSFNVRCGGWSAS*FVPV 192
           G N Y P G   A G  Y  R +L+   +S+ V  G W    FVP+
Sbjct: 189 GWNRYVPEGNMTACGTDYFNRGLLS---ASYLVCYGIWVY--FVPL 229


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 352 RLQINAQNCIHCKTCDIKDPSQNINWVVPEG 444
           R+ I     +  +  DIK+ S  IN+ +P+G
Sbjct: 501 RMSILVATAVAARGLDIKNVSHVINYDLPKG 531


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 329 GTNSYTPAGQNLASGPSYTPRLVLTGTVSSFNVRCGGWSAS*FVPV 192
           G N Y P G   A G  Y  R +L+   +S+ V  G W    FVP+
Sbjct: 65  GWNRYVPEGNMTACGTDYFNRGLLS---ASYLVCYGIWVY--FVPL 105


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 548 EYFLKRIIVLFLLDSYGFNEYLVSIYIP 465
           EY   ++ +LF  +   F+ YL+ IYIP
Sbjct: 227 EYSCLKVDLLFKRE---FSYYLIQIYIP 251


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 548 EYFLKRIIVLFLLDSYGFNEYLVSIYIP 465
           EY   ++ +LF  +   F+ YL+ IYIP
Sbjct: 227 EYSCLKVDLLFKRE---FSYYLIQIYIP 251


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 140 TPSRTGWLPSICCPLLRSQAQITKRTSL 223
           TP+ T   P++ CPL  +   +T +  L
Sbjct: 207 TPNYTACPPTLACPLNPNPQPLTGQQEL 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,285
Number of Sequences: 438
Number of extensions: 5821
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)