Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17h18f
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0241 - 19332540-19332635,19332931-19333023,19333743-193337... 31 0.26
05_07_0219 - 28474661-28475146,28475979-28476644 29 0.60
03_06_0627 - 35172246-35172349,35172903-35173005,35173107-351731... 28 1.4
07_03_1455 - 26659480-26659758,26659907-26660149 28 1.8
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 27 2.4
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225... 27 3.2
02_03_0125 + 15529391-15529495,15530066-15530226,15530315-155305... 26 7.4
10_08_1004 + 22170866-22171442,22172424-22173337,22173426-22173566 25 9.7
08_02_0174 + 13769487-13770352,13770357-13770408,13770438-137707... 25 9.7
06_03_0007 - 15325720-15325739,15326236-15326383,15326512-153270... 25 9.7
06_02_0335 - 14591512-14591772,14594021-14594215,14594379-145946... 25 9.7
>05_04_0241 -
19332540-19332635,19332931-19333023,19333743-19333790,
19333907-19333999
Length = 109
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 69 MSVWSTLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGK 212
M +W L R V +R + + V G F ER + ++E N G+
Sbjct: 1 MGLWDALYRVVMRRNAVYVTFVVAGAFAGERAVDYGVHKVWEMNNIGE 48
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.5 bits (63), Expect = 0.60
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 155 KEERSSGNSQSKRRCTFENSTI*CRPHGHFENF 57
K + +SGN + K R F S I CR G F +F
Sbjct: 322 KSDEASGNGEKKFRGKFNKSKIECRRCGKFGHF 354
>03_06_0627 -
35172246-35172349,35172903-35173005,35173107-35173190,
35173504-35173599,35173686-35173736,35173805-35173945,
35174098-35174154,35175089-35175163,35176255-35176527,
35176608-35176667,35176754-35176846,35177196-35177348
Length = 429
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = +2
Query: 65 QNVRVVYIKSYCFQ-----TYIYVCFGCCRRNV 148
Q V ++Y+K Y +Q YI+ C G C R++
Sbjct: 180 QRVPLIYVKLYTYQICRALAYIHNCVGICHRDI 212
>07_03_1455 - 26659480-26659758,26659907-26660149
Length = 173
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 67 KCPCGLH*IVLFSNVHLRLLWLLPEERSSLK 159
+CP G H I + HLR +W P+E S K
Sbjct: 24 RCPHGGHDIKDAAIAHLRKMWFPPKENSPRK 54
>12_02_1091 - 26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 169 SNVLSKKNVPPATAKANVDVRLKTVRFNVDHTDILKIFSRKS 44
+NVL V ++A+ N V+L+ + + TD+LKI KS
Sbjct: 989 NNVLKSSQVKGSSARTN-RVKLRNLLAAAEGTDLLKIMQSKS 1029
>01_02_0071 +
10822008-10822011,10822219-10822364,10822452-10822544,
10822722-10822781,10822855-10823127,10823229-10823303,
10823419-10823475,10823593-10823733,10823813-10823863,
10823905-10823955,10823956-10824051,10824159-10824242,
10824330-10824432,10824518-10824600
Length = 438
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = +2
Query: 65 QNVRVVYIKSYCFQ-----TYIYVCFGCCRRNV 148
Q + ++Y+K Y +Q YI+ C G C R++
Sbjct: 179 QRMPLIYVKLYMYQICRALAYIHNCVGVCHRDI 211
>02_03_0125 +
15529391-15529495,15530066-15530226,15530315-15530570,
15531360-15531374,15533608-15533967
Length = 298
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 167 KCSFKEERSSGNSQSKRRCTFENSTI*CRPHG 72
K S K + G+ S C + + CRPHG
Sbjct: 59 KLSSKRSMAGGDEDSVATCREDCPPVHCRPHG 90
>10_08_1004 + 22170866-22171442,22172424-22173337,22173426-22173566
Length = 543
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 101 FQTYIYVCFGCCRRN 145
F T+++ FGCC++N
Sbjct: 522 FWTWLFSLFGCCKKN 536
>08_02_0174 +
13769487-13770352,13770357-13770408,13770438-13770705,
13770745-13771022,13771049-13771486
Length = 633
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 136 ATAKANVDVRLKTVRFNVD 80
+TA AN+DVR ++RF+++
Sbjct: 602 STAGANIDVRTGSIRFHIN 620
>06_03_0007 -
15325720-15325739,15326236-15326383,15326512-15327025,
15327077-15327507
Length = 370
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 136 ATAKANVDVRLKTVRFNVD 80
+TA AN+DVR ++RF+++
Sbjct: 124 STAGANIDVRTGSIRFHIN 142
>06_02_0335 -
14591512-14591772,14594021-14594215,14594379-14594679,
14594930-14595051,14595287-14595466,14595514-14596337,
14596377-14596435,14596480-14597075
Length = 845
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 136 ATAKANVDVRLKTVRFNVD 80
+TA AN+DVR ++RF+++
Sbjct: 433 STAGANIDVRTGSIRFHIN 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,960,892
Number of Sequences: 37544
Number of extensions: 112929
Number of successful extensions: 305
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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