Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17h14f
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   2.8  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    26   4.8  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    26   4.8  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 436 STTQMLPPSLQHEFYVLSSIVQRIPTLQPGTQNWFGAKISRVMVPTLADSQDVLAPSVYN 615
           S   +L PS   + Y LSS      + Q G  ++FG+      +PT +  +   +P  Y 
Sbjct: 39  SDKSVLSPSTMSDSYALSSTYTAGSSYQNGESDYFGS------LPTPSSDKSSTSPFPYL 92

Query: 616 RGS 624
           +GS
Sbjct: 93  KGS 95


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -3

Query: 201 ESRTHLRKSLSLEVILPILKALALS-VDLGSATSLVDTATIAVNTNNRAN---FILQEIC 34
           +S TH++   SL+ I+P +  L L+ V L     +    TI +N N   +   F L  I 
Sbjct: 226 QSETHVKNIDSLQQIVPTIPHLPLNLVQLKITPEISAIRTILINKNTHPDDLQFFLSRIG 285

Query: 33  TGTQN 19
           T   N
Sbjct: 286 TMLMN 290


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 495 STTDTHPSTRNAELVRGKNKQGDGTHP 575
           +TTD HP      ++ G N Q D   P
Sbjct: 93  ATTDPHPDNSKIVILMGSNFQNDANSP 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,565
Number of Sequences: 5004
Number of extensions: 61554
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)