Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17h14f
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719...    29   5.1  
04_04_0441 - 25226870-25228327                                         28   6.7  
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167...    28   8.8  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    28   8.8  

>12_01_0788 +
           7192937-7192994,7193074-7193160,7193242-7193307,
           7193447-7193555,7194522-7194785,7194919-7195006,
           7195085-7195708,7196017-7196140,7196195-7196337,
           7196434-7196649,7196781-7196873,7196952-7197032,
           7197120-7197504,7197599-7197636
          Length = 791

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 510 HPSTRNAELVRGKNKQGDGTHPCGLTRR--PSTIGIQQRVPDFITHRPLSKFSW 665
           H ST N++ VRGKNK      P G         IGI  R      H P+ +  W
Sbjct: 457 HVSTSNSKKVRGKNKSKVERRPIGENHELLSREIGIVTRY-----HAPIKRIGW 505


>04_04_0441 - 25226870-25228327
          Length = 485

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -2

Query: 595 GRLVSPQGWVPSPCLFLPRTSSAFRVE-GWVSVVL*NLRHRTHVASW-VGA---FGLLMS 431
           GR +  +GW P   +    ++ AF    GW S +L +LRH   +  W VGA   F  ++ 
Sbjct: 340 GRGLVVRGWAPQARILAHPSTGAFLTHCGWNS-ILESLRHGVPLLGWPVGAEQFFNAMVV 398

Query: 430 IEPG 419
           +E G
Sbjct: 399 VEWG 402


>04_04_0396 +
           24915880-24916222,24916318-24916577,24916689-24916784,
           24916889-24917059,24917262-24917975
          Length = 527

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +1

Query: 442 TQMLPPSLQHEFYVLSSIVQRIPTLQPGTQNWFGAKISRVMVPTLADSQDVLAPSVYNRG 621
           +++ PP ++  FY L   +Q    L  G   W+G  + +++  T  +  ++    +    
Sbjct: 380 SKLCPPGIEGTFYALLMSIQNAGLLMSG---WWGGLMLQLLNVTRTEFSNLWVAVLIRNL 436

Query: 622 SQILSLIDLF 651
           S++L L+ LF
Sbjct: 437 SRLLPLMLLF 446


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = +1

Query: 406 C*LLTRAQSTSTTQ--MLPPSLQHEFYV---LSSIVQRIPTLQP--GTQNWFGAKISRVM 564
           C  L+R + T+ T   +   S  H  Y     SSI Q  P +    G  +W   KI  + 
Sbjct: 76  CTPLSRRRGTANTDGFLFSDSALHNVYPEDQFSSIKQLHPWIPSTTGRSSWLEEKIPVIH 135

Query: 565 VPTLADSQDVLAPSVYNRGSQILSLIDLF 651
             T A +   +  SV ++ S   S+ID F
Sbjct: 136 QRTSAAASSEIGSSVLHKPSLFPSIIDCF 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,442,447
Number of Sequences: 37544
Number of extensions: 382827
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)