Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17h14f
(734 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M36067-1|AAA59518.1| 919|Homo sapiens LIG1 protein. 31 5.7
BC110622-1|AAI10623.1| 801|Homo sapiens LIG1 protein protein. 31 5.7
BC108318-1|AAI08319.1| 919|Homo sapiens ligase I, DNA, ATP-depe... 31 5.7
AF527418-1|AAM77697.1| 919|Homo sapiens ligase I, DNA, ATP-depe... 31 5.7
AB208791-1|BAD92028.1| 832|Homo sapiens DNA ligase I variant pr... 31 5.7
AL359540-8|CAI21719.1| 546|Homo sapiens mutY homolog (E. coli) ... 30 7.5
AL359540-5|CAI21717.1| 546|Homo sapiens mutY homolog (E. coli) ... 30 7.5
AL359540-4|CAI21715.1| 291|Homo sapiens mutY homolog (E. coli) ... 30 7.5
AF527839-1|AAM78555.1| 546|Homo sapiens mutY homolog protein. 30 7.5
AB032924-1|BAA89340.1| 532|Homo sapiens hMYHbeta1 protein. 30 7.5
AB032920-1|BAA89336.1| 546|Homo sapiens hMYHalpha1 protein. 30 7.5
>M36067-1|AAA59518.1| 919|Homo sapiens LIG1 protein.
Length = 919
Score = 30.7 bits (66), Expect = 5.7
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -3
Query: 480 IELMLQAGWEHLGC*CRLSPGK*LTPVVLVHPVQSITK-MKLFQ 352
I ++L+ G E L C+LSPG L P +L HP + I++ +K F+
Sbjct: 517 IPVLLEHGLERLPEHCKLSPGIPLKP-MLAHPTRGISEVLKRFE 559
>BC110622-1|AAI10623.1| 801|Homo sapiens LIG1 protein protein.
Length = 801
Score = 30.7 bits (66), Expect = 5.7
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -3
Query: 480 IELMLQAGWEHLGC*CRLSPGK*LTPVVLVHPVQSITK-MKLFQ 352
I ++L+ G E L C+LSPG L P +L HP + I++ +K F+
Sbjct: 517 IPVLLEHGLERLPEHCKLSPGIPLKP-MLAHPTRGISEVLKRFE 559
>BC108318-1|AAI08319.1| 919|Homo sapiens ligase I, DNA,
ATP-dependent protein.
Length = 919
Score = 30.7 bits (66), Expect = 5.7
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -3
Query: 480 IELMLQAGWEHLGC*CRLSPGK*LTPVVLVHPVQSITK-MKLFQ 352
I ++L+ G E L C+LSPG L P +L HP + I++ +K F+
Sbjct: 517 IPVLLEHGLERLPEHCKLSPGIPLKP-MLAHPTRGISEVLKRFE 559
>AF527418-1|AAM77697.1| 919|Homo sapiens ligase I, DNA,
ATP-dependent protein.
Length = 919
Score = 30.7 bits (66), Expect = 5.7
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -3
Query: 480 IELMLQAGWEHLGC*CRLSPGK*LTPVVLVHPVQSITK-MKLFQ 352
I ++L+ G E L C+LSPG L P +L HP + I++ +K F+
Sbjct: 517 IPVLLEHGLERLPEHCKLSPGIPLKP-MLAHPTRGISEVLKRFE 559
>AB208791-1|BAD92028.1| 832|Homo sapiens DNA ligase I variant
protein.
Length = 832
Score = 30.7 bits (66), Expect = 5.7
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -3
Query: 480 IELMLQAGWEHLGC*CRLSPGK*LTPVVLVHPVQSITK-MKLFQ 352
I ++L+ G E L C+LSPG L P +L HP + I++ +K F+
Sbjct: 548 IPVLLEHGLERLPEHCKLSPGIPLKP-MLAHPTRGISEVLKRFE 590
>AL359540-8|CAI21719.1| 546|Homo sapiens mutY homolog (E. coli)
protein.
Length = 546
Score = 30.3 bits (65), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 573 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 692
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 62 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 101
>AL359540-5|CAI21717.1| 546|Homo sapiens mutY homolog (E. coli)
protein.
Length = 546
Score = 30.3 bits (65), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 573 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 692
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 62 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 101
>AL359540-4|CAI21715.1| 291|Homo sapiens mutY homolog (E. coli)
protein.
Length = 291
Score = 30.3 bits (65), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 573 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 692
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 48 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 87
>AF527839-1|AAM78555.1| 546|Homo sapiens mutY homolog protein.
Length = 546
Score = 30.3 bits (65), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 573 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 692
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 62 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 101
>AB032924-1|BAA89340.1| 532|Homo sapiens hMYHbeta1 protein.
Length = 532
Score = 30.3 bits (65), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 573 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 692
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 48 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 87
>AB032920-1|BAA89336.1| 546|Homo sapiens hMYHalpha1 protein.
Length = 546
Score = 30.3 bits (65), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 573 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 692
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 62 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 101
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,074,558
Number of Sequences: 237096
Number of extensions: 2330247
Number of successful extensions: 3467
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3465
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -