Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17h14f
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 498 TTDTHPSTRNAELVRGKNKQGDGTHP 575
           + D HP+ R    +R K + G+GT P
Sbjct: 386 SVDKHPNRRARGQLRTKIESGEGTIP 411


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 574 LADSQDVLAPSVYNR 618
           L +S+DVL PSVY R
Sbjct: 247 LFESEDVLLPSVYLR 261


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 231 EDNSHL*TIAESRTHLRKSLSLEVILPIL 145
           ++N+H  +    RTHLR +L++ V + +L
Sbjct: 118 QNNNHYTSHQHLRTHLRGTLTVNVSVLLL 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,911
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)