Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17h11r
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   8.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 248 LKIYILFTVYYFRK*HIIIHCRLRVS 171
           L+IY   TV Y  + H+I+ C+ R++
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLN 191


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 248 LKIYILFTVYYFRK*HIIIHCRLRVS 171
           L+IY   TV Y  + H+I+ C+ R++
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLN 191


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 248 LKIYILFTVYYFRK*HIIIHCRLRVS 171
           L+IY   TV Y  + H+I+ C+ R++
Sbjct: 217 LRIYRNGTVNYLMRRHLILSCQGRLN 242


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 248 LKIYILFTVYYFRK*HIIIHCRLRVS 171
           L+IY   TV Y  + H+I+ C+ R++
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLN 191


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 70  CIFPPFVMYSLSLFMFLTKPSFF 2
           C+ P FV   + +  +L +PSF+
Sbjct: 152 CVVPSFVKDLVRVVSWLQEPSFY 174


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 70  CIFPPFVMYSLSLFMFLTKPSFF 2
           C+ P FV   + +  +L +PSF+
Sbjct: 152 CVVPSFVKDLVRVVSWLQEPSFY 174


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 319 CPGNFLRDQEKSIIVKFTKRFAN*LTYYTYIL 414
           CPG   R  + +   K ++RFA+   Y  Y L
Sbjct: 409 CPGRVRRRYQPAFRCKPSQRFASGRYYSAYSL 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,595
Number of Sequences: 438
Number of extensions: 5176
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)