Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17h01f
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    33   0.034
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   2.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.9  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   5.2  

>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 26/101 (25%), Positives = 48/101 (47%)
 Frame = +3

Query: 153 KPIDAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIK 332
           K +  F +YSV+D D  +ER R+    +   + V+   + R++W +F   K+ ++    +
Sbjct: 217 KMVANFEEYSVEDVDKRRERNRK----LSEPLLVNGRYRVRDRWAQFR--KSEIEKP-YR 269

Query: 333 LNELVDESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTG 455
                DE      LP+ +H+ +  E + +    ED FH  G
Sbjct: 270 FTFFTDE------LPSTIHSHEMWELVHDGQSFEDLFHSGG 304


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 666 SWSHDEYLYQFLLHNKSTIPEKGLYMIRYHSFY 764
           S S+ E+  Q LLH +S IP K +     +SF+
Sbjct: 222 SVSYSEFDEQLLLHARSLIPSKAVVEFLINSFF 254


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 639  HCGIDNLLMSWSHDEYLYQFLLHNKSTIPE 728
            HCGI  LL+  S  +YL   LL   S +PE
Sbjct: 1219 HCGISELLIHLSQAQYL--ILLKLASNLPE 1246


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 189  DTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLK 290
            D D +   +R  + L+HSN  ++ +KQ+ E+  K
Sbjct: 1035 DVDQMNSLLREAFVLLHSNNIMERLKQEFEERYK 1068


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,270
Number of Sequences: 5004
Number of extensions: 65867
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)