Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17h01f
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323...   230   8e-61
04_01_0063 - 630345-633743                                             32   0.58 
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    30   2.3  
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629...    29   4.1  
11_06_0437 - 23533218-23536382                                         28   7.2  
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042...    28   9.5  
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830     28   9.5  

>06_03_0471 +
           21130839-21130869,21131013-21131127,21132228-21132309,
           21132444-21132648,21133237-21133296,21133420-21133472,
           21133589-21133711,21133844-21133913,21134012-21134090,
           21134172-21134253,21134272-21134310
          Length = 312

 Score =  230 bits (563), Expect = 8e-61
 Identities = 106/207 (51%), Positives = 141/207 (68%), Gaps = 3/207 (1%)
 Frame = +3

Query: 162 DAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNE 341
           +AFR+Y  +     KE V   Y + H N T D V++ RE++ + +  +  + + +  LNE
Sbjct: 46  NAFRNYEAESER--KETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNE 103

Query: 342 LVDESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIHDLGKVM---AFYDEPQWCV 512
            +D+SDPD D+P I H  QTAE IR+D PDEDW HLTGLIHDLGKV+   +F + PQW V
Sbjct: 104 FIDDSDPDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSV 163

Query: 513 VGDTFPVGCKWADSIVYGPESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEYLY 692
           VGDTFPVGC + +  V+  + FK+NPD  NPK NTK+G Y   CG+DN+LMSW HD+Y+Y
Sbjct: 164 VGDTFPVGCAFDECNVHF-KYFKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHDDYMY 222

Query: 693 QFLLHNKSTIPEKGLYMIRYHSFYPWH 773
                NK+T+P  GL++IRYHSFYP H
Sbjct: 223 LVAKENKTTLPSAGLFIIRYHSFYPLH 249


>04_01_0063 - 630345-633743
          Length = 1132

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 66  NKMAAEVEKKPVSMIDPSQLLRPEPTFNDKP-IDAFRDYSVDDTDPIKERVRRTYY 230
           +K+      K V+M   SQ + P P FN++   + F  Y++DD   +  + R T+Y
Sbjct: 279 SKVLVTTRFKDVAMSLSSQRIIPVPNFNEEDFFNLFMHYALDDAVSLDGQERETFY 334


>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +2

Query: 257 FGQTKTREMAKVQPLQGHSEGCSHQAQ*AGGRVRPRHGPTKHRARF 394
           FGQ   R   + +PL GH     H+ + AGGR R R G T    R+
Sbjct: 43  FGQ---RNRGRFRPLFGHKPPFGHKLREAGGRAR-RDGLTSRTGRY 84


>09_04_0518 -
           18261420-18261953,18262054-18262626,18262736-18262948,
           18263379-18263510,18263591-18263731,18263899-18264120
          Length = 604

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 243 NVTVDLVKQKREKWLKFNH-FKATVKDALIKLNELVDES 356
           NV   LV   REK  +++H FKA   +ALI+++ L+ +S
Sbjct: 137 NVLPTLVYMAREKSPQYHHNFKAGALNALIRVSALISDS 175


>11_06_0437 - 23533218-23536382
          Length = 1054

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 426 PDEDWF-HLTGLIHDLGKVMAFYDEPQWCVVGD 521
           PD   F H+   IHDL + +AF+   Q C VGD
Sbjct: 505 PDGSHFDHIRCKIHDLLRQLAFHLSRQECFVGD 537


>12_02_0828 -
           23502276-23503472,23503568-23504002,23504097-23504213,
           23505330-23505396,23505685-23505725,23506161-23506237,
           23506699-23506945
          Length = 726

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +3

Query: 180 SVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDAL--IKLNELVDE 353
           S ++      RVR    +++    + LV ++     KF      ++ AL  I  NEL D 
Sbjct: 118 SFEERPQTLHRVRVINGMLYECYDIILVLERDSVMKKFQGVILQLEQALCDIPYNEL-DI 176

Query: 354 SDPDTDLPNIVHAFQTAERIREDHPDEDWFH 446
           SD   +   +VHA     + R D PD+++++
Sbjct: 177 SDEVREQVELVHAQLKRAKERIDMPDDEFYN 207


>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
          Length = 763

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +3

Query: 567 PESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEY 686
           P      P+ Y  +Y  +YG   PH   D L  S   D Y
Sbjct: 86  PPPLGRGPEHYRSRYTGRYGSGFPHSPNDQLHRSMHRDRY 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,459,527
Number of Sequences: 37544
Number of extensions: 463341
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)