Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17h01f
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038609-3|AAU87825.1|  193|Caenorhabditis elegans Hypothetical ...   228   4e-60
AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical ...    30   1.6  
L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with...    29   3.7  
L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with...    29   3.7  
Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical p...    29   4.9  
U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.        29   4.9  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    28   6.4  
Z81464-7|CAB03857.2|  338|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF038609-3|AAU87825.1|  193|Caenorhabditis elegans Hypothetical
           protein C54E4.5 protein.
          Length = 193

 Score =  228 bits (557), Expect = 4e-60
 Identities = 98/176 (55%), Positives = 124/176 (70%)
 Frame = +3

Query: 168 FRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNELV 347
           +R Y V   DPI+ RVR  Y+  H   TVD VK+  +KWLKF+H K  +   L  L   +
Sbjct: 16  YRIYDVKAEDPIQVRVRTHYFTQHQKQTVDFVKEMHQKWLKFDHAKMPILGCLDMLATFL 75

Query: 348 DESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIHDLGKVMAFYDEPQWCVVGDTF 527
           DESDPD D  N++HA+QTAE+IRE+HPD+ W HL GLIHDLGK+M+ + E QW V GDT+
Sbjct: 76  DESDPDVDEANLIHAYQTAEKIRENHPDKPWMHLAGLIHDLGKIMSVWGEEQWAVTGDTY 135

Query: 528 PVGCKWADSIVYGPESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEYLYQ 695
           PVGC  A SIVYG  SF  NPD  +P Y T+ GMY+  CG++NLLM+WSHDEY+Y+
Sbjct: 136 PVGCAPAASIVYGKSSFDGNPDISHPVYGTQMGMYQEKCGMENLLMTWSHDEYMYK 191


>AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical
           protein F56C11.6b protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 609 YNTKYGMYKPHCGIDNLLMSWSHDEYLYQFLLHNKS 716
           Y+  YG Y+    + N++    HD Y YQF  HN +
Sbjct: 286 YSINYGTYR----LANIMTDLQHDVYFYQFDYHNSA 317


>AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical
           protein F56C11.6a protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 609 YNTKYGMYKPHCGIDNLLMSWSHDEYLYQFLLHNKS 716
           Y+  YG Y+    + N++    HD Y YQF  HN +
Sbjct: 403 YSINYGTYR----LANIMTDLQHDVYFYQFDYHNSA 434


>L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           b protein.
          Length = 926

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 162 DAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDAL-IKLN 338
           DA  +Y +D  +P   R  +  YL  + +T  + K   +KW KF+    T K  L I  N
Sbjct: 669 DAGCNYIIDHLNPQHHRHLKNVYLCGNELTPPVAKLLIQKWSKFDGL--TPKPVLHIHTN 726

Query: 339 ELVDE 353
              DE
Sbjct: 727 SFGDE 731


>L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           a protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 162 DAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDAL-IKLN 338
           DA  +Y +D  +P   R  +  YL  + +T  + K   +KW KF+    T K  L I  N
Sbjct: 706 DAGCNYIIDHLNPQHHRHLKNVYLCGNELTPPVAKLLIQKWSKFDGL--TPKPVLHIHTN 763

Query: 339 ELVDE 353
              DE
Sbjct: 764 SFGDE 768


>Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical
           protein T05C12.7 protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 255 DLVKQKREKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAERIREDHPDE 434
           +LVKQK       N ++   K+A+  ++E +  +       ++V+A +T+   +   PD 
Sbjct: 110 ELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDA 169

Query: 435 DWF 443
           D+F
Sbjct: 170 DFF 172


>U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 255 DLVKQKREKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAERIREDHPDE 434
           +LVKQK       N ++   K+A+  ++E +  +       ++V+A +T+   +   PD 
Sbjct: 110 ELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDA 169

Query: 435 DWF 443
           D+F
Sbjct: 170 DFF 172


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 183  VDDTDPIKERVRRTYYLMHS--NVTVDLVKQKREKWLKFNHFKATVKDALIKLNELVDES 356
            V   D +   +RR +   H+  N   +L KQ  +K  + N   + + +AL +LN   +E 
Sbjct: 971  VQTRDELSLELRRAHDTCHNKNNQIDELKKQLNQKISEVNKLSSKI-EALSQLNRTYNEE 1029

Query: 357  DPDTDLPNIVHAFQTAERIREDHPDEDWFHL 449
            + +      +   Q  E ++    D+D +HL
Sbjct: 1030 NRNLSRQLEILLTQNKELLQRALHDKDQYHL 1060


>Z81464-7|CAB03857.2|  338|Caenorhabditis elegans Hypothetical
           protein C08E8.2 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 99  VSMIDPSQLLRPEPTF---NDKPIDAFRDYSVDDTDPIKE 209
           V +ID S  LRP+ T      KPID FR   ++D D I E
Sbjct: 94  VFIIDFSDELRPKSTQILDASKPIDGFRPNFLNDLDVISE 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,707
Number of Sequences: 27780
Number of extensions: 377769
Number of successful extensions: 1001
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)