Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17g22f
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce... 91 1e-19
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 28 1.2
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 28 1.2
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 27 2.2
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.8
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 27 3.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 6.6
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 8.8
>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 168
Score = 91.5 bits (217), Expect = 1e-19
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Frame = +3
Query: 210 GEVIVRAATKHDMSAVAEMIQELADYEKMSDGPKLSIKDL-VHDGFEKQPPEFFCKVAEK 386
G V +R+ K D+ V + I+ELA++EK D + +I +L V GF + V +
Sbjct: 2 GSVRIRSVIKEDLPTVYQFIKELAEFEKCEDQVEATIPNLEVAFGFIDEVTPVAYGVFIE 61
Query: 387 HKENILGYAIYFPVYSTWEGRA-LMLEDLYVRMNERRRGVGRLLFDAVAKEASATGCCRL 563
+ G AIYF +STW R + LEDLYVR R +G G L +A+E+ G RL
Sbjct: 62 ENDQPAGMAIYFLNFSTWTSRVGIYLEDLYVRPQFRGKGYGSYLLSYLARESLRIGGRRL 121
Query: 564 DFHVLEWNP-ACSFYESKGAVNLTNKEQWCYYRLTGDALRDFA 689
D+ VL+WN A YE GA + W R+TG+ L+ A
Sbjct: 122 DWVVLDWNQRAIEVYEKAGAQKVGG---WSMMRVTGENLKALA 161
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 168 VYRKAPEMSNKYKSGEVIVRAATKHDMSAVAEMIQELADYEKMSD 302
+YR P KS +V + TK+ A+ M+Q + D D
Sbjct: 1325 LYRNKPSGIKLDKSALAVVVSHTKYSSEAIGNMLQSIIDISSFKD 1369
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 505 PTPLRRSFILTYRSSSISARPSHVEYTGK*IA 410
P PLRRS + Y+S S + PS Y IA
Sbjct: 320 PPPLRRSSTMNYKSVSTTTSPSKYGYVSGRIA 351
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 595 QAGFHSRTWKSRRQQPVADASFATASKSNLPTPLRR 488
++G W + +PVA + +T+ +N +PL+R
Sbjct: 35 ESGDTRSVWTTHTGEPVASSVLSTSGSNNFSSPLKR 70
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 570 HVLEWNPACSFYESKGAVNLTNKEQWCYYRLTGDALRDFA 689
H+LE AC+ ES+ KE R T A+RD A
Sbjct: 430 HLLEMGEACTSRESQKTRKKNLKENIRKQRTTSTAIRDIA 469
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 210 GEVIVRAATKHDMSAVAEMIQELADYE--KMSDGPKLSIKDLVHDGFEKQPPEFFCKVAE 383
GE+IVR +S+V M+ +L++ + K + K S++ ++ F Q F V++
Sbjct: 169 GELIVRTTQGQGISSVLSMVHDLSEVDSLKTRNEVKKSLQSFMNFFFSDQERVFAADVSQ 228
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 405 GYAIYFPVYSTWE 443
GY+IYFP+Y W+
Sbjct: 1138 GYSIYFPMYIDWK 1150
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 441 EGRALMLEDLYVRMNERRRGVGRLLFDAVAKEASATGCCRLDFHVLEWNPA-CSFYESKG 617
E +L + L V R G+G LL D V K A R+ HV N + +Y + G
Sbjct: 438 EDNSLYVTVLCVLAPYRCLGIGSLLIDHVKKTAINNNIDRISLHVQTTNESVIKWYTAHG 497
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 141 TTLGLSY*AVYRKAPEMSNKYKSGEVIVRAATKHDMSAVA 260
T +GLS +++R P + E + ATK+D S+ A
Sbjct: 548 TLIGLSNNSIFRIDPRVEGNKLVAEQFKQYATKNDFSSAA 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,938
Number of Sequences: 5004
Number of extensions: 60621
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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