Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17g22f
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0362 - 2825880-2826563                                           73   2e-13
05_01_0008 + 60498-60552,60644-60864,60956-61013,61271-61443,615...    29   5.2  
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    28   9.2  
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6...    28   9.2  

>03_01_0362 - 2825880-2826563
          Length = 227

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
 Frame = +3

Query: 405 GYAIYFPVYSTWEGR-ALMLEDLYVRMNERRRGVGRLLFDAVAKEASATGCCRLDFHVLE 581
           G+ I FP YST+  +  L +ED++VR   RRRG+GR++  AVA +A+  G  R+++ VL+
Sbjct: 121 GFVICFPNYSTFLSKPGLYVEDIFVRAPWRRRGLGRMMLSAVAGKAAELGMGRVEWCVLD 180

Query: 582 WNP-ACSFYESKGAVNLTNKEQWCYYRLTGDAL 677
           WN  A  FYE  GA  L    QW   RLTG AL
Sbjct: 181 WNKNAIDFYEGMGAEVL---PQWRICRLTGAAL 210


>05_01_0008 +
           60498-60552,60644-60864,60956-61013,61271-61443,
           61528-61711,61823-61993,62483-62514,62596-62638,
           62768-62835,63561-63605,63695-64162
          Length = 505

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 561 LDFHVLEWNPAC-SFYESKGAVNLTNKEQWCYYRLTGDALRDFAKDG*VNVP 713
           LD    E    C S   S+ ++N+T ++++  YR   +     A++G VN P
Sbjct: 242 LDSQAKELKSLCESLNHSRDSINITREDRFSQYRALEEHAPSAARNGPVNTP 293


>05_05_0156 +
           22792783-22793410,22797153-22797227,22797644-22798879,
           22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 383 FCNFTEELRWLFFKAVMHQIFNG*FWTIRH 294
           F N  E   WL ++ +M  I N  FWT+ H
Sbjct: 720 FLNLDEPDPWLLYENMMDCIGNHRFWTLSH 749


>02_01_0001 -
           3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
           6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
           7538-7667,7753-8255
          Length = 577

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 375 VAEKHKENILGYAIYFPVYSTWEGRALMLEDLYVRMNERRRGVGRLL 515
           V ++ K+ +L     + +Y+ W G    LE  Y ++ +  RG+  L+
Sbjct: 436 VLDESKDALLEVCSSWKIYAPWCGHCQELEPTYNKLGKHLRGIDSLV 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,549,437
Number of Sequences: 37544
Number of extensions: 371862
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)