Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17g11f
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.081
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    30   0.33 
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    30   0.43 
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    28   1.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   4.0  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   7.1  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   9.4  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   9.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   9.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 474 SSQPEPKTSPVDVDPSPKPLPPTSTGMIGRRAQCPLERYGPLVKTGRQYST-RPPMKP 644
           SS+P P+  P    P+P P+PP S G +      P     P+       ST +PP+ P
Sbjct: 238 SSRP-PERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 444 DEYRAAVRSMSSQPEPKTSPVDVDPSPKPLPP 539
           D+Y ++ R++S +  P  +P   DP P P PP
Sbjct: 210 DDYYSSGRAVSPEIPPTYTPKQADPLPAPPPP 241


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 12/62 (19%), Positives = 28/62 (45%)
 Frame = +3

Query: 381 GFYCRIDKIQEEEAEKIGMTKDEYRAAVRSMSSQPEPKTSPVDVDPSPKPLPPTSTGMIG 560
           G +  +D+++ E     G  ++E+     +     +P+T P+ +DP    +P      +G
Sbjct: 178 GDHGSVDELESEREGNSGEEEEEFHGFESNSDEFHQPETKPIRMDPLKPAVPSLPNANVG 237

Query: 561 RR 566
            +
Sbjct: 238 SK 239


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 315 QGVLNALARKTRDTARIWRERWGFYCRIDKIQEEEAEKI--GMTKDEYRAAVRSM 473
           +G L  +A+K R+  ++W     F C++ KI    A  +  G  K  Y A  +SM
Sbjct: 5   KGGLFKIAKKLRNGTKVWARAGYFKCKLLKITTTGAPCLFAGRLKRRYDATFQSM 59


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 303 PVKAQGVLNALARKTRDTARIWRE 374
           P++  GV+ ++ + T+D  RIW+E
Sbjct: 201 PMEFSGVVESIPQSTKDLLRIWKE 224


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 468 SMSSQPEPKTSPVDVDPSPKPLPPTST 548
           S +S P P TS    D +  PLP TST
Sbjct: 144 SSTSIPIPPTSTSSTDTNSNPLPTTST 170



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 468 SMSSQPEPKTSPVDVDPSPKPLPPTST 548
           S +S P P TS    D +  PLP TST
Sbjct: 201 SSTSIPIPPTSTSSTDTNSSPLPTTST 227



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 468 SMSSQPEPKTSPVDVDPSPKPLPPTST 548
           S +S P P TS    D +  PLP TST
Sbjct: 257 SSTSIPIPPTSTSSTDTNSSPLPTTST 283


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 346 VLRANAFKTP*AFTGSVDGSRRPPMAGAAGAEFSIENLC*F-SQSLV 209
           +L+   F +   +TGSV  +   P A  A   F+IE LC F S+S V
Sbjct: 264 ILKTVKFSSEDEYTGSVSLAWNGPSALDAYTVFAIETLCEFLSESAV 310


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 620 VLSTSFDQRTVPLQWTLSSTTNHT--SRCWRKRLGRWIHIDW 501
           V+S + D  +VPLQ ++ S+ NH   +    KR G W H ++
Sbjct: 210 VISITQDVSSVPLQSSVFSSGNHAYHASMAPKRSGSWRHTNF 251


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 468  SMSSQPEPKTSPVDVDPSPKP 530
            S S  P P  +PV+V P+P P
Sbjct: 1028 SSSGVPAPNLTPVNVPPTPPP 1048


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 585 APMDTELDDQSYQSMLEEEAWEMDPHRLEMS 493
           +P+D ELDD +Y    EEE     P  L++S
Sbjct: 598 SPLDLELDDPTYSD--EEEVLFAPPGDLQLS 626


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 311 FHGICRWFSTTSYGWSG 261
           FHG C  FST ++ ++G
Sbjct: 269 FHGFCSVFSTAAFSYAG 285


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 435 MTKDEYRAAVRSMSSQPEPKTSPVDVDPSPK 527
           M+  + R+     ++Q +PK SP    P PK
Sbjct: 1   MSNSDIRSFFGGGNAQKKPKVSPTPTSPKPK 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,576,288
Number of Sequences: 5004
Number of extensions: 80778
Number of successful extensions: 279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)