Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17g11f
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = +3

Query: 447 EYRAAVRSMSSQPEPKTSPVDVDPSPKPL----PPTSTGMIGRRAQCPL 581
           EY   V        P ++PV   PSP PL    P   T ++  R +C +
Sbjct: 424 EYGIRVERDPILTPPSSNPVSPVPSPDPLDLAIPVRETLILPPRKRCKM 472



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 390 SKNPIFPAISLLCL*FCEPMRSKLLELSRDLSMVLDDLLWLERQGL 253
           S NP+ P  S   L    P+R  L+   R    ++ + + +ER GL
Sbjct: 439 SSNPVSPVPSPDPLDLAIPVRETLILPPRKRCKMILESMEIERNGL 484


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/57 (21%), Positives = 24/57 (42%)
 Frame = +3

Query: 408 QEEEAEKIGMTKDEYRAAVRSMSSQPEPKTSPVDVDPSPKPLPPTSTGMIGRRAQCP 578
           Q+++ ++   +  +Y     S +S P   ++      S  P P +ST      + CP
Sbjct: 802 QQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLSGCP 858


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 516 PSPKPLPPTSTG 551
           P+P P PP+S+G
Sbjct: 341 PAPPPPPPSSSG 352


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -2

Query: 635 WWTRRVLSTSFDQRTV 588
           WW  ++ + SFD++++
Sbjct: 367 WWNMKISNLSFDKQSL 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,644
Number of Sequences: 438
Number of extensions: 5724
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)