Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17g08f
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   2.9  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    26   6.7  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = -3

Query: 324 LDEFHKQFSFNSRHIQVKRAVSDTVFCSYVSSWFCLVSSS 205
           LD+ H++  FN + + + +A+ D++    +   + ++ +S
Sbjct: 377 LDDIHRRTCFNGKRLYITKAIRDSMVGDSIHGLYSILETS 416


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 758 LTKMIYSKLFKSLKSVITFLNSIKH 684
           LTK +  KL ++L+S I+ L  I+H
Sbjct: 46  LTKKLTKKLLENLESEISILKEIRH 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,275
Number of Sequences: 5004
Number of extensions: 55201
Number of successful extensions: 145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)