Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17g06f
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-6|CAB07617.1| 136|Caenorhabditis elegans Hypothetical pr... 82 5e-16
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 32 0.36
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 32 0.36
Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical pr... 31 0.63
AF016449-7|AAG24000.2| 350|Caenorhabditis elegans Hypothetical ... 28 5.9
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 28 7.8
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 28 7.8
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 28 7.8
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 28 7.8
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 28 7.8
>Z93382-6|CAB07617.1| 136|Caenorhabditis elegans Hypothetical
protein F45G2.8 protein.
Length = 136
Score = 81.8 bits (193), Expect = 5e-16
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Frame = +2
Query: 113 QIIVLGAQVVGRAFARALKQEI-----AASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEA 277
++ + + V +A RA++ EI AA++ G++LEE+
Sbjct: 8 KVALAAGEAVAKALTRAVRDEIKQTQQAAARHAASTGQSASETRENANSNAKLGISLEES 67
Query: 278 MQILNIEK-VDPEKISKNYEHLFAVNDKSKGGSFYLQSKIVRAKERLDAELKQTSPNSEQ 454
+QILN++ ++ E++ K+YEHLF +NDKSKGG+ YLQSK+ RAKER+D E + E+
Sbjct: 68 LQILNVKTPLNREEVEKHYEHLFNINDKSKGGTLYLQSKVFRAKERIDEEFGRIELKEEK 127
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 490 HSRVS*SVFRRALLGVG*C--LF*FRI*SLLRSYDFRLQIKRTSFRFVVYGEKVF 332
H+ + ++F+R L C F F + SLL DF++ I + F+ Y E VF
Sbjct: 290 HTFLHENIFKRRLFNSTACNVFFTFAVSSLLHGLDFQMTITLLALGFIAYSETVF 344
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 490 HSRVS*SVFRRALLGVG*C--LF*FRI*SLLRSYDFRLQIKRTSFRFVVYGEKVF 332
H+ + ++F+R L C F F + SLL DF++ I + F+ Y E VF
Sbjct: 290 HTFLHENIFKRRLFNSTACNVFFTFAVSSLLHGLDFQMTITLLALGFIAYSETVF 344
>Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical
protein F10A3.5 protein.
Length = 324
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 193 LLGCSYFLFQGACE--CSTYNLSAQNYYLSYVFSHVSLSTVLYKFLSLRNNHKINRLTVN 20
LLG SYF Q A CSTY + + + + ++S+++ LY+F + LT N
Sbjct: 83 LLGYSYFTGQLALATLCSTYGMMITMLAMHFYYRYLSVTSSLYRFFFKNLTIWVIFLTCN 142
Query: 19 S 17
S
Sbjct: 143 S 143
>AF016449-7|AAG24000.2| 350|Caenorhabditis elegans Hypothetical
protein C50H11.13 protein.
Length = 350
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 208 WRWTRRSAESCCQCFHRVDFRRSNA 282
W W AE CC F + FR S++
Sbjct: 121 WTWVAMFAERCCNIFFPLRFRTSSS 145
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +2
Query: 281 QILNIEKVDPEKISKNYEHLFA---VNDKSKGGSFYLQSKIVRAKERLDAELKQTSPNSE 451
Q+L EK +P+K++ + LF V K ++Q I + + L QT P
Sbjct: 510 QLLKKEK-EPKKLNNEHRKLFENGNVAQKKPEPRRHVQKLIAKKPNSI---LNQTEPTKI 565
Query: 452 QGPSKDTS*DSAVI*CVVIK 511
+GP K + + VI VI+
Sbjct: 566 EGPDKQETRPTTVIRRTVIR 585
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 284 ILNIEKVDPEKISKNYEHLFAVNDKSKGGS 373
IL+++ V E NY+ + A+ D++ GGS
Sbjct: 126 ILDMDDVLEEVFDLNYDQILAITDEANGGS 155
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 284 ILNIEKVDPEKISKNYEHLFAVNDKSKGGS 373
IL+++ V E NY+ + A+ D++ GGS
Sbjct: 90 ILDMDDVLEEVFDLNYDQILAITDEANGGS 119
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 284 ILNIEKVDPEKISKNYEHLFAVNDKSKGGS 373
IL+++ V E NY+ + A+ D++ GGS
Sbjct: 126 ILDMDDVLEEVFDLNYDQILAITDEANGGS 155
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 284 ILNIEKVDPEKISKNYEHLFAVNDKSKGGS 373
IL+++ V E NY+ + A+ D++ GGS
Sbjct: 126 ILDMDDVLEEVFDLNYDQILAITDEANGGS 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,926,469
Number of Sequences: 27780
Number of extensions: 289305
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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