Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17g05f
         (415 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069555-1|AAL39700.1|  639|Drosophila melanogaster LD28458p pro...    29   3.2  
AE014297-3277|AAF56101.2|  639|Drosophila melanogaster CG31365-P...    29   3.2  
X98881-1|CAA67384.1|  865|Drosophila melanogaster nuclear hormon...    27   9.8  
U01087-1|AAA19975.1|  864|Drosophila melanogaster nuclear hormon...    27   9.8  
AF238308-1|AAF69494.1|  866|Drosophila melanogaster nuclear rece...    27   9.8  
AE014296-3498|AAF51692.2|  862|Drosophila melanogaster CG18023-P...    27   9.8  

>AY069555-1|AAL39700.1|  639|Drosophila melanogaster LD28458p
           protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -2

Query: 288 DPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALAXSV 124
           D + R       A  ++  L   +L + A+LTT+LRK L+ EV   + K LA  V
Sbjct: 132 DEKWREDFKEEQAAEMHKRLVKSRLELRAKLTTELRKELAEEVRSEVRKELAEEV 186


>AE014297-3277|AAF56101.2|  639|Drosophila melanogaster CG31365-PA
           protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -2

Query: 288 DPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALAXSV 124
           D + R       A  ++  L   +L + A+LTT+LRK L+ EV   + K LA  V
Sbjct: 132 DEKWREDFKEEQAAEMHKRLVKSRLELRAKLTTELRKELAEEVRSEVRKELAEEV 186


>X98881-1|CAA67384.1|  865|Drosophila melanogaster nuclear hormone
           receptor protein.
          Length = 865

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 286 SSDADSPDASTGRRRESHVENPPVNCSSTAH 194
           SS A S   S+GR   + V NP    SS AH
Sbjct: 277 SSSAVSSTISSGRSSNNSVVNPAATSSSVAH 307


>U01087-1|AAA19975.1|  864|Drosophila melanogaster nuclear hormone
           receptor superfamilyprotein protein.
          Length = 864

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 286 SSDADSPDASTGRRRESHVENPPVNCSSTAH 194
           SS A S   S+GR   + V NP    SS AH
Sbjct: 277 SSSAVSSTISSGRSSNNSVVNPAATSSSVAH 307


>AF238308-1|AAF69494.1|  866|Drosophila melanogaster nuclear
           receptor E78A protein.
          Length = 866

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 286 SSDADSPDASTGRRRESHVENPPVNCSSTAH 194
           SS A S   S+GR   + V NP    SS AH
Sbjct: 277 SSSAVSSTISSGRSSNNSVVNPAATSSSVAH 307


>AE014296-3498|AAF51692.2|  862|Drosophila melanogaster CG18023-PA,
           isoform A protein.
          Length = 862

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 286 SSDADSPDASTGRRRESHVENPPVNCSSTAH 194
           SS A S   S+GR   + V NP    SS AH
Sbjct: 273 SSSAVSSTISSGRSSNNSVVNPAATSSSVAH 303


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,666,917
Number of Sequences: 53049
Number of extensions: 181816
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)