Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17g05f
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   5.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 291 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALAXS 127
           V  +  + L R PAG+V+      + +VA    T + K  ++     ILK +  S
Sbjct: 74  VHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAILKCVVPS 128


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 198 AVLLQLTGG 224
           AVLLQLTGG
Sbjct: 94  AVLLQLTGG 102


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 259 TRQGCPRPRIDTVHKG 306
           T Q CP P + T   G
Sbjct: 614 TNQSCPSPPVTTKRDG 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,292
Number of Sequences: 438
Number of extensions: 1031
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)