Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17g04f
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 255 2e-68
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 138 5e-33
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 130 1e-30
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 122 2e-28
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 112 3e-25
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 97 1e-20
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 95 6e-20
U23169-6|AAC46695.1| 393|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 5.5
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 5.5
Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical pr... 28 7.3
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 28 7.3
U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein. 28 7.3
L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 27 9.6
AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 27 9.6
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 255 bits (625), Expect = 2e-68
Identities = 113/214 (52%), Positives = 163/214 (76%)
Frame = +2
Query: 53 MARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRL 232
M+R SSAGFDRHITIFSPEGR+YQVEYA KAIN LT+VA++G DAAV+A Q++VPD L
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL 60
Query: 233 LDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIAD 412
+ +VT ++ ++ +GC GMI D++ Q++RA+ EAA+W+YK G ++P +L +++AD
Sbjct: 61 IVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMAD 120
Query: 413 ISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLE 592
++Q YTQNAEMR LGC+++ I+YDDE GP VY+ DP+GYY K V+ G K + ++LE
Sbjct: 121 LNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLE 180
Query: 593 KKLKKRSDLSTDDAIQLAISCLSQVLSVDFKSSE 694
KK+KK+S+L++ +AI+LAI L L +D +S +
Sbjct: 181 KKIKKKSELTSTEAIELAIEALQTSLGIDVRSKD 214
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 138 bits (333), Expect = 5e-33
Identities = 77/207 (37%), Positives = 119/207 (57%), Gaps = 1/207 (0%)
Frame = +2
Query: 77 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 256
+D TIFSPEGRLYQVEYA++AI+ G T + + ++ VVAA+RK +LLD +T
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAISHAG-TCLGILSSEGIVVAAERKNVHKLLDDSVMTE 63
Query: 257 -LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 433
++ L+D I C + G+ AD+ + R+ AA+++ YG E+PV L + + + Q YTQ
Sbjct: 64 KVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQ 123
Query: 434 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRS 613
RP G S++ I +D G +Y++DPSG Y +KA G+ L+++ K
Sbjct: 124 IGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSP- 182
Query: 614 DLSTDDAIQLAISCLSQVLSVDFKSSE 694
+ ++A QLAI L + L V S +
Sbjct: 183 --NLEEAKQLAIKVLWKTLDVKLASEK 207
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 130 bits (313), Expect = 1e-30
Identities = 67/198 (33%), Positives = 110/198 (55%)
Frame = +2
Query: 77 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 256
+DR ITIFSP+G L+QVEYA +A+ +G T+V +RG D V+ ++K L D ++
Sbjct: 4 YDRAITIFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDCIVIGVEKKSIPALQDDRTIRK 62
Query: 257 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 436
+ + D + G+ AD+R V RAR E +++ + V + R IA+ Q +TQ+
Sbjct: 63 IHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQS 122
Query: 437 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSD 616
RP G SM++ +D + P ++KT+PSG Y Y A A G YLE++ + +
Sbjct: 123 PGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENT 182
Query: 617 LSTDDAIQLAISCLSQVL 670
+ ++L + L+QV+
Sbjct: 183 VDEATTLKLVVKSLAQVV 200
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 122 bits (295), Expect = 2e-28
Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 1/197 (0%)
Frame = +2
Query: 89 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFAL 268
+T FSP G+L Q+EYAL A+ + G SV LR D V+A + V L D +
Sbjct: 9 LTTFSPSGKLMQIEYALNAV-KNGQPSVGLRAKDGVVLATEN-VGSVLTDDQPKVE--QI 64
Query: 269 TDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMR 448
+ IGCV +GM D R V++AR A ++ YG E+P L IA + Q YTQ+ +R
Sbjct: 65 SKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVR 124
Query: 449 PLGCSMMLIAYDDEAG-PCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSDLST 625
P G S+++ +D G P +++ DPSG Y ++KA A G V+ +LEK+ + +L
Sbjct: 125 PFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALEL-- 182
Query: 626 DDAIQLAISCLSQVLSV 676
DD I A+ L + V
Sbjct: 183 DDGIHTALLTLRESFDV 199
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 112 bits (269), Expect = 3e-25
Identities = 66/209 (31%), Positives = 120/209 (57%), Gaps = 4/209 (1%)
Frame = +2
Query: 77 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 256
+DR + FSPEGRL+QVEYA++A+ G TS+ ++ ++ ++AA+++ +L+ ++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAVKLGS-TSIGIKTSEGVLLAAEKRSTSKLMVNDAIEK 66
Query: 257 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 436
+ + IG G+IADSR+ V+RA+ EA N+ + Y +I V + + +A+++ + +
Sbjct: 67 ISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDD 126
Query: 437 ---AEM-RPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLK 604
A M RP G +M+ D E G ++ DPSG + KA + GA + DG A K +
Sbjct: 127 DVKASMSRPFGVAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAAS-DG-AEQNLKEQ 183
Query: 605 KRSDLSTDDAIQLAISCLSQVLSVDFKSS 691
L+ + +++A++ L QV+ S+
Sbjct: 184 YHDALTIKEGLKMALAILKQVMEEKLNSA 212
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 97.1 bits (231), Expect = 1e-20
Identities = 51/174 (29%), Positives = 86/174 (49%)
Frame = +2
Query: 74 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVT 253
G+D + FSP+GR++QVEYA KA++ G T +A+RG + VV A + + +L +
Sbjct: 7 GYDLAASTFSPDGRIFQVEYAQKAVDNAG-TMIAIRGKNGVVVVADKLISSKLYTDNANP 65
Query: 254 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 433
+F + D +G + G D + A EA W Y +P+ + +A+ ++T
Sbjct: 66 RMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTL 125
Query: 434 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEK 595
RP G ++++ + G ++ +PSG YKA A G A +EK
Sbjct: 126 GIS-RPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEK 178
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 94.7 bits (225), Expect = 6e-20
Identities = 53/201 (26%), Positives = 99/201 (49%)
Frame = +2
Query: 77 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 256
+D +T++SP+GRL+QVEYA++A+ QG T V ++ AV+ A ++ + L
Sbjct: 6 YDGDVTVWSPQGRLHQVEYAVEAMKQGSAT-VGIKSETHAVIVALKRAQNDLSS--HQKK 62
Query: 257 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 436
++ + G + G+++D R + + E ++W++ Y +P+ L + Q TQ
Sbjct: 63 VYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQY 122
Query: 437 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSD 616
RP G +++ YD + G + +TDPS S + GA++ YLE+ +
Sbjct: 123 YGRRPFGVGILIAGYDKD-GAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEK 181
Query: 617 LSTDDAIQLAISCLSQVLSVD 679
+ + I A+ L L +
Sbjct: 182 STPEQLIVHALLALRDTLPAE 202
>U23169-6|AAC46695.1| 393|Caenorhabditis elegans Hypothetical
protein C29H12.2 protein.
Length = 393
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 101 SPEGRLYQVEYALKAINQGGLTSVALRGTDAAV 199
+PEGRL V YA K I + ++AL GT ++
Sbjct: 250 NPEGRLEDVFYAWKEITEEPTIALALSGTVVSI 282
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 586 ISVSINCLSTSSYSFIGAVVAGGVCFVHTG 497
+ +S+NC S ++ + G+V+ C + TG
Sbjct: 1227 LEISLNCSSDGTWRYTGSVINSVSCIISTG 1256
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 586 ISVSINCLSTSSYSFIGAVVAGGVCFVHTG 497
+ +S+NC S ++ + G+V+ C + TG
Sbjct: 1227 LEISLNCSSDGTWRYTGSVINSVSCIISTG 1256
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 586 ISVSINCLSTSSYSFIGAVVAGGVCFVHTG 497
+ +S+NC S ++ + G+V+ C + TG
Sbjct: 1227 LEISLNCSSDGTWRYTGSVINSVSCIISTG 1256
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 586 ISVSINCLSTSSYSFIGAVVAGGVCFVHTG 497
+ +S+NC S ++ + G+V+ C + TG
Sbjct: 1227 LEISLNCSSDGTWRYTGSVINSVSCIISTG 1256
>Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical
protein ZC168.4 protein.
Length = 361
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 536 SYKAVAAGAKTVDGNAYLEKKLKKRSDLSTDDAIQLAISCLSQVLSVDFKSSE 694
SYK G N Y KL + S+L TDD ++ I+ + Q VD E
Sbjct: 310 SYKNFKQGKLVAIKNKYQSSKLAQVSNLMTDDVLE-KINRMGQNAKVDASEME 361
>Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical
protein F08G12.2 protein.
Length = 331
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +1
Query: 319 SSTTSSLRGC--QLAVQVWV*DT--CAYLMQTHS*YLSSLHPKCRDET 450
++ +SSL C +V+VW +T CA +TH+ +++++HP R T
Sbjct: 90 TTDSSSLVSCGTDKSVRVWDMETGTCARRFRTHTDFVNAVHPSRRGVT 137
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/88 (15%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 158 GLTSVALRGTDAAVVAAQRKVPDRLLD-PVSVTHLFALTDRIGCVMTGMIADSRSQVQRA 334
G T VA+ G + +A+ ++ +++ + +TD++ + G +D+R+ +++
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 335 RYEAANWQYKYGSEIPVHILCRRIADIS 418
+ ++ + I +L I++++
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLA 95
>U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein.
Length = 361
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 536 SYKAVAAGAKTVDGNAYLEKKLKKRSDLSTDDAIQLAISCLSQVLSVDFKSSE 694
SYK G N Y KL + S+L TDD ++ I+ + Q VD E
Sbjct: 310 SYKNFKQGKLVAIKNKYQSSKLAQVSNLMTDDVLE-KINRMGQNAKVDASEME 361
>L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical
protein C06G4.1 protein.
Length = 886
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = +2
Query: 107 EGRLYQVEYA-------LKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD 238
+ RL ++ YA L+ + +GG T V L+G + AQ+ + D ++D
Sbjct: 558 KARLLEIHYATGCHLIFLEEVKRGGYTYVELKGDPEHIKNAQKMIDDMVID 608
>AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing
protein protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 566 TVDGNAYLEKKLKKRSDLSTDDAIQLAISCLSQVLSVDFKSSE 694
T A +EKKLK+ S+ + IQ+ C + S +F S+
Sbjct: 123 TPGATAAIEKKLKEISEAAQSADIQIGAPCRNNGCSTEFDGSK 165
>AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein
protein 1 protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 566 TVDGNAYLEKKLKKRSDLSTDDAIQLAISCLSQVLSVDFKSSE 694
T A +EKKLK+ S+ + IQ+ C + S +F S+
Sbjct: 123 TPGATAAIEKKLKEISEAAQSADIQIGAPCRNNGCSTEFDGSK 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,318
Number of Sequences: 27780
Number of extensions: 284201
Number of successful extensions: 731
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -