Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17g03f
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    69   4e-14
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    55   9e-10
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    36   4e-04
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.80 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.9  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 69.3 bits (162), Expect = 4e-14
 Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
 Frame = +3

Query: 324 MPSIAGK-YQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRT 500
           MP   GK Y+ Y +E+ DD+  A+GV  M RK+ S  SP++E++ +    T+K +S  + 
Sbjct: 1   MPDFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKN 60

Query: 501 VEHKFKLGEEYEEK-MPNSIIKSVTTITNDSEMETK 605
            E KFKLGEE+EE+ +    +KSV T+  +  ++ +
Sbjct: 61  TEIKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQ 96


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 54.8 bits (126), Expect = 9e-10
 Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
 Frame = +3

Query: 324 MPSIAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTV 503
           M    GK+Q     + +++   +G   +   ++    P  E+S +GD  T  +SS   T 
Sbjct: 1   MVQFEGKFQFVSQNNFEEFAKVLGDQNLVNTVLQ-PRPSFELSKNGDEWTFTSSSGDNTY 59

Query: 504 EHKFKLGEEYEEKMPNSIIKSVTTITN--DSEMETKSVIPDTGAKCGRHYQFTDEECIVT 677
              FK+   +EE +P+   +   T+T+   +  +T++ + D+  K  R Y+F+D E +V 
Sbjct: 60  TKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDS-LKVTRLYEFSDNELLVH 118

Query: 678 LTHENASVSGKRYFRRV 728
           ++   + V   R ++RV
Sbjct: 119 ISTNKSDVKATRVYKRV 135


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +3

Query: 339 GKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFK 518
           GK+Q     + +++   +G   +   ++    P  E+S +GD  T  +SS   T    FK
Sbjct: 4   GKFQFVSQNNFEEFAKVLGDQNLVNTVLQ-PRPSFELSKNGDEWTFTSSSGDNTYTKTFK 62

Query: 519 LGEEYEEKMPNSIIKSVTTITN 584
           +   +EE +P+   +   T+T+
Sbjct: 63  MNVPFEETLPSLPDRKFQTVTS 84


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 189 LYFINCNYLSFIRD**FFDKI*IT 260
           L FIN NY++ +R   F DK+ +T
Sbjct: 621 LLFINNNYINLVRPNTFTDKVNLT 644


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 676 LSHMKMQVFLGNATFAECSRPYGEI 750
           LSH+  +  L   T  EC + YG I
Sbjct: 306 LSHILQKTTLNMLTQVECYKYYGNI 330


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 525 EEYEEKMPNSIIKSVTTITNDSEMETKSVI 614
           + YE  +P+ ++ SVT++  D EM +   I
Sbjct: 111 KSYEIWVPDIVMHSVTSVGIDLEMPSVECI 140


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 398 TIYGSKNDVNVITINGNFN*WGYYDYKKFIIVTNSRTQI 514
           TI+ + N  N    N N+N   Y +YKK     N   QI
Sbjct: 89  TIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQI 127


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 11  RRYLPTYIKFSNK 49
           R Y P YIK++N+
Sbjct: 471 REYCPRYIKWTNR 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,818
Number of Sequences: 438
Number of extensions: 4426
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)