Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17f23f
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0440 - 17605405-17605476,17605558-17605629,17606014-176062... 30 2.3
08_02_0933 + 22740123-22740364,22741952-22742390,22743060-227431... 30 2.3
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465... 29 3.0
12_02_0090 + 13493311-13494180 29 5.2
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 29 5.2
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 28 6.9
06_02_0040 + 10882897-10884744,10885568-10885666 28 9.2
02_05_1347 + 35837967-35838060,35838524-35838783 28 9.2
>09_04_0440 -
17605405-17605476,17605558-17605629,17606014-17606277,
17607106-17607510
Length = 270
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 690 DYLKQGIFQKPVDCGPVIGNSGWHGL*EEVSDGVGEV 580
D L+ I +KP + P GW G EV DG GEV
Sbjct: 82 DDLRVLISEKPAEPAPA-KREGWEGFGREVGDGDGEV 117
>08_02_0933 +
22740123-22740364,22741952-22742390,22743060-22743172,
22743470-22743575
Length = 299
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 609 EEVSDGVGEVASKQINI*IRLNSS*GKVYIETPNRNSGDDADAYTHFSTNTKVV--YGGT 436
EE +DGV E +Q+N I + S V + PNR D D T T+ + +GG+
Sbjct: 218 EEGNDGVAEGILEQVNSTIFILKSGLGVGRKRPNRKDRDRKDRDQEIRTETEAMGRHGGS 277
Query: 435 STG 427
+G
Sbjct: 278 GSG 280
>06_01_0641 -
4652380-4653771,4653850-4654521,4654536-4654707,
4655515-4655690
Length = 803
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -2
Query: 513 PNRNSGDDADAYTHFSTNTKVVYGGTSTGASVAFVIEHIKLNTGSTDASFNTR*TQD*VE 334
P R S A++Y H ++ +GG S G + +H + ST +SF + D VE
Sbjct: 292 PARLSAASAESYDHSFETSRTPWGGDSFGGN-----DHTSFSQSST-SSFCSIGMDD-VE 344
Query: 333 TGAKDAKI-VSDNDDVA*SSAFDVLGESGKCMEVFLWR 223
T K ++ + D+ ++ + L K ME+ W+
Sbjct: 345 TEMKRLRLELKQTMDMYSTACKEALNAKQKAMELQRWK 382
>12_02_0090 + 13493311-13494180
Length = 289
Score = 28.7 bits (61), Expect = 5.2
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +2
Query: 374 SVLPVLSLMCSITKATLAPVDVPP*TTFVLVLKCV*ASASSPEFLLGVSI*TLP*EELR- 550
SV P+LS++ + T + + +T VL + +SAS+P F S T P +
Sbjct: 126 SVNPILSIIGVPSPTTTSSLATTTTSTAVLFPRSTLSSASTPSFTTTSSPVTAPKSSTKY 185
Query: 551 RI*MLICLDATSPTPSLTSSHRPCQPLLPITGPQSTGF 664
+ I L P T+S PC +PI+ ++ F
Sbjct: 186 TVATEIVLSPVFPPSCQTTS--PCTGGMPISANRNVAF 221
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 210 SSINVQWIESGFSYLLLIFSMAEATWLVTKRS*RAFISVCSSKVCVL 70
S + W ES + +LL+F+ W++ S I VC C L
Sbjct: 4 SLFSCNWFESFTNLMLLVFAFIPFCWMMMMMS--LIIDVCLDSACAL 48
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 549 LNSS*GKVYIETP-NRNSGDDADAYTHFSTNTKVVYGGTSTGASVAFVIEHIKLNT 385
L+SS K ++ P +RNSGDD + H KV+ + +F +H K T
Sbjct: 236 LSSSFQKEQVKRPISRNSGDDISSSFHKEQGRKVISRNSENDRVASFHKQHDKRPT 291
>06_02_0040 + 10882897-10884744,10885568-10885666
Length = 648
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 198 VQWIESGFSYLLLIFSMAEATWLVTKRS*RAFISVC---SSKVCVLAQARIAVRT 43
++W+ S F +LLL+ + AT LV AF + SS + A +RIA RT
Sbjct: 173 LRWLASSFLFLLLLDRLGTATALVLLALSLAFFAASPKPSSFLSRAASSRIAGRT 227
>02_05_1347 + 35837967-35838060,35838524-35838783
Length = 117
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 578 ATSPTPSLTSSHRPCQPLLPITGPQST 658
A SPT L+SSH+PC+ L T T
Sbjct: 2 AASPTRLLSSSHQPCKESLHCTATGRT 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,672
Number of Sequences: 37544
Number of extensions: 367394
Number of successful extensions: 962
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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