Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f23f
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025452-2|AAB70943.1|  585|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z92832-4|CAB07373.1|  488|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF025452-2|AAB70943.1|  585|Caenorhabditis elegans Hypothetical
           protein B0454.6 protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = +1

Query: 226 PEEDFHALAAFAEDIKSTGLSNIVIITNNFSILSARLNLVLSLPRVEASVGAARVELNVF 405
           P +  H  A FAE   + G + ++ I +  +++    NLV  +  +  +V A   +  +F
Sbjct: 293 PYDQVHTTAPFAEAFSARGCTTVMYIISIGALIGLTNNLVTGVFALPRAVYAMADDGLIF 352

Query: 406 DYEGYASASGRAAIN 450
            +  + ++S +  +N
Sbjct: 353 KWLAHVTSSTKVPLN 367


>Z92832-4|CAB07373.1|  488|Caenorhabditis elegans Hypothetical
           protein F31D4.5 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
 Frame = +2

Query: 89  EQTEINARQERLV--TNQVASAIENIKSK*EKPDSIHWTLIEEKLSSLQRKTSMHL 250
           ++ E+ A +E+L+  T ++   ++N+K++ +  + +  TL +EK+ SL  KT  HL
Sbjct: 246 DKEELEAEREKLIRTTKKLKDDLQNVKNELKMTNEMKKTLEQEKM-SLNSKTE-HL 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,258,881
Number of Sequences: 27780
Number of extensions: 304769
Number of successful extensions: 839
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)