Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f20f
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ...    28   7.3  
Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 167 RYPRAWTRPNLHRKSRRRLHFPNF*HLQR 253
           RY   W   + H ++RR +  PN  H+QR
Sbjct: 374 RYNSTWIHYSYHDENRREIESPNLVHVQR 402


>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = -2

Query: 680 EDDALNNLPDLVVVSFEKFWKFVIQSV-------IQPLGYVLAEENNFESGLNIANSKNG 522
           EDDA++ +P++    FE+  KF  +SV        +     L +   F +       + G
Sbjct: 732 EDDAVDPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGEQRG 791

Query: 521 TELPNA 504
           ++ P+A
Sbjct: 792 SDAPSA 797


>Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical
           protein T03E6.3 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 647 VVVSFEKFWKFVIQSVIQPLGYVLAEENNF 558
           +V  F+ FW F   ++IQP+ ++  +E  F
Sbjct: 220 IVRIFKPFWSFYFHNMIQPIIFMKLKEQEF 249


>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical
           protein T01G1.1c protein.
          Length = 1580

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 555 LKVVLFGEDVSERLNDALNN---KLPELLETYNDQIREIVERI 674
           L  V+   D+ E+L D L     +  ++ ETY  ++RE++ERI
Sbjct: 602 LSEVMIELDIKEKLIDQLERAERQNQQIRETYEKKLRELMERI 644


>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
           protein T01G1.1a protein.
          Length = 1605

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 555 LKVVLFGEDVSERLNDALNN---KLPELLETYNDQIREIVERI 674
           L  V+   D+ E+L D L     +  ++ ETY  ++RE++ERI
Sbjct: 602 LSEVMIELDIKEKLIDQLERAERQNQQIRETYEKKLRELMERI 644


>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical
           protein T01G1.1c protein.
          Length = 1580

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 555 LKVVLFGEDVSERLNDALNN---KLPELLETYNDQIREIVERI 674
           L  V+   D+ E+L D L     +  ++ ETY  ++RE++ERI
Sbjct: 602 LSEVMIELDIKEKLIDQLERAERQNQQIRETYEKKLRELMERI 644


>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
           protein T01G1.1a protein.
          Length = 1605

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 555 LKVVLFGEDVSERLNDALNN---KLPELLETYNDQIREIVERI 674
           L  V+   D+ E+L D L     +  ++ ETY  ++RE++ERI
Sbjct: 602 LSEVMIELDIKEKLIDQLERAERQNQQIRETYEKKLRELMERI 644


>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
           protein KLP-12 protein.
          Length = 1609

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 555 LKVVLFGEDVSERLNDALNN---KLPELLETYNDQIREIVERI 674
           L  V+   D+ E+L D L     +  ++ ETY  ++RE++ERI
Sbjct: 606 LSEVMIELDIKEKLIDQLERAERQNQQIRETYEKKLRELMERI 648


>Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical
           protein T16G1.9 protein.
          Length = 945

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -2

Query: 692 VDDEEDDALNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENNFESGLNIANSKN 525
           VD++    L+ LP  V +  E  W F ++  + P   V+ + +  + G   A+ ++
Sbjct: 595 VDEKNGPLLSTLPPFVTLCVEGTWPFEVERYVSPRVSVVIKFSTGDDGYLCASPES 650


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,799,422
Number of Sequences: 27780
Number of extensions: 271006
Number of successful extensions: 804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)