Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f19r
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    31   0.16 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    31   0.21 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.1  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    28   1.5  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   2.0  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    27   3.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   3.5  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   4.6  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   8.0  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   8.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   8.0  

>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 571 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 675
           I   +MR ELG   T RC   D QA    K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = -3

Query: 194 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYAAEVSRVLEYVAQTRHQQITV 18
           AITIGD  + L  +   +++GP V +F  + +P +LT ++  +S   +++ Q   Q +++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS--LSNYQQHLYQVLTQNVSL 235

Query: 17  NYSXR 3
            +  R
Sbjct: 236 RFCSR 240


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 165 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPNSS 34
           PP  S+   S  S   +P + P +P  L    QP + V+ P S+
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 272 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 93
           A E  +A    S  L  N+    + AAIT    K  +  + F +E G  V    E+I   
Sbjct: 74  AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130

Query: 92  LTDYAAE-VSRVLE 54
           + DY AE  S++LE
Sbjct: 131 VGDYVAENKSKILE 144


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +3

Query: 228 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 341
           EG     LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 107 KIPVYLTDYAAEVSRVLEYVAQTRHQQITV 18
           K+ +YLT+Y  + +RV EY  +T+   +T+
Sbjct: 261 KVILYLTNYMKDDNRVKEYFMKTQPPLVTL 290


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 174 QI*PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPNSSSTD 25
           QI PP+Q   +    S+Q  PR++        S     S   RP+SSSTD
Sbjct: 372 QIKPPSQVFMSTGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRPHSSSTD 421


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 201 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 320
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 107  KIPVYLTDYAAEVSRVLEYVAQTRHQQITVNYS 9
            K+P +  DY  EV R+++  A    + I   +S
Sbjct: 968  KVPTFYADYVNEVKRIIQRNANLEFEAIWKGHS 1000


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 231 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 335
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +3

Query: 219 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 386
           VV E D   +LS   LK  ++G      +AEN     S T    NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 519 ERISRSQQFTDFIEQV*DHDVKDA 590
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 81  RSRGQPCSGVRRPNSSSTDY 22
           R+RGQ  SG +RP+SS + Y
Sbjct: 738 RARGQSVSGQQRPSSSMSLY 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,609
Number of Sequences: 5004
Number of extensions: 46697
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)