Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f18f
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    30   1.8  
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866...    29   3.1  
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     29   4.1  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    29   5.4  

>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 113 RQDRIRMGSRRRTVPLPAVTAHGEP*GSSQRLWSH 217
           R+  +R+  RRR  PLPA  A   P   S ++WS+
Sbjct: 5   RESLVRLIGRRRRSPLPAALALAVPPSRSLQVWSN 39


>09_04_0745 +
           19884868-19886000,19886110-19886309,19886422-19886666,
           19886880-19887668
          Length = 788

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 564 PNSYFQERYHWSRFFPNRWQSDGNRR 487
           P S+  +  H  R +P RW+S G+RR
Sbjct: 14  PVSWCHQDRHGRRHYPRRWRSSGSRR 39


>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 603 FLSRTRWSHLEGRPNSYFQERYHWSRFFPNRWQSDGNRRSC 481
           F+  TR   LEG  ++YF E  + S   P   Q DG  +SC
Sbjct: 448 FIPETRGIPLEGVGSAYFNELINRSMIQPADVQYDGTVQSC 488


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 603 FLSRTRWSHLEGRPNSYFQERYHWSRFFPNRWQSDGNRRSC 481
           F+ R R S+LE   + YF E    +   P R  S G  RSC
Sbjct: 534 FIGRVRGSNLEEIADKYFDEFISRNIVTPIRIDSSGEVRSC 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,361,114
Number of Sequences: 37544
Number of extensions: 437216
Number of successful extensions: 1106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)