Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17f18f
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 67 1e-11
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 47 1e-05
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 37 0.018
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 34 0.13
AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical ... 31 1.2
AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical ... 31 1.2
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 30 1.6
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 29 3.6
Z99942-6|CAI79199.1| 119|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z35663-9|CAA84730.1| 219|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z35598-7|CAA84650.2| 325|Caenorhabditis elegans Hypothetical pr... 28 8.4
AC006656-3|AAF39882.1| 549|Caenorhabditis elegans Hypothetical ... 28 8.4
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 66.9 bits (156), Expect = 1e-11
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 8/203 (3%)
Frame = +3
Query: 114 ARIVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHC-----TATRVTI 278
AR+V G+E G FP+ +LR N + CGA+I+ +TAAHC + +
Sbjct: 25 ARVVGGFETVPGAFPWTAALR--NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEV 82
Query: 279 VIRAGTVNMT-RPAVVFETTDYLNHPLYDESIQQIVQPHDIGLIKFG-RSLVFNDYVQPI 452
V+ N T +F +PLY + + HDI +++ + FN+Y QPI
Sbjct: 83 VVGDWDNNQTDGNEQIFYLQRIHFYPLYKD-----IFSHDIAILEIPYPGIEFNEYAQPI 137
Query: 453 RLQSSYHKDYNY-DGYRLTATGWGRTWTNGTAPENMNWVFLRGVTNAFCSEIFVINNIVQ 629
L S KD+ Y G + +GWG E + + + C I + +
Sbjct: 138 CLPS---KDFVYTPGRQCVVSGWGSMGLR--YAERLQAALIPIINRFDCVNSSQIYSSMS 192
Query: 630 DSTICASGYNVTSQSTCQGDSGG 698
S CA GY +CQGDSGG
Sbjct: 193 RSAFCA-GYLEGGIDSCQGDSGG 214
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 47.2 bits (107), Expect = 1e-05
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 5/201 (2%)
Frame = +3
Query: 117 RIVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHCTATR---VTIVIR 287
R++ G E+ +P+ ++++++ G + CG ++I ++ LTAAHC A + +R
Sbjct: 57 RLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVR 113
Query: 288 AGTVNMTRPAVVFETTDYLNHPLYDESIQQIVQPHDIGLIKFGRSLVFNDYVQPIRLQSS 467
G + + T HP Y+ +D +++ + + +PI L S
Sbjct: 114 VGG-HRSGSGSPHRVTAVSIHPWYNIGFPS---SYDFAIMRIHPPVNTSTTARPICLPSL 169
Query: 468 YHKDYNYDGYRLTATGWGRTWTNGT-APENMNWVFLRGVTNAFCSEI-FVINNIVQDSTI 641
+ TGWG T + + + + + ++ FCS + I I S +
Sbjct: 170 PAVENRL----CVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSML 225
Query: 642 CASGYNVTSQSTCQGDSGGGL 704
CA GY+ +CQGDSGG L
Sbjct: 226 CA-GYSYGKIDSCQGDSGGPL 245
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 36.7 bits (81), Expect = 0.018
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = +3
Query: 390 HDIGLIKFGRSLVFNDYVQPIRLQSSYHKDYNYDGYRLTATGWGRTWT-NGTAPENMNWV 566
HD +++ + + F++ V+PI L + Y L GWGR + +G +
Sbjct: 143 HDWAIVEVEKRIHFSENVRPICLP----RPNMYYTKSLAVPGWGRIFNESGPLIHEIPMR 198
Query: 567 FLRGVTNAFCSEIFVINNIVQDSTICASGYNVTSQS---TCQGDSGGGL 704
R + + D ICA+ NV++ S TC GDSGGGL
Sbjct: 199 IDRDCKRPWSDRL----PADADDFICATSMNVSNYSAPRTCHGDSGGGL 243
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 33.9 bits (74), Expect = 0.13
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 117 RIVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHCT---ATRVTIVIR 287
RI+ G ++G + L G CGAT+I W +TAAHC TR + +R
Sbjct: 37 RIIGGNSIDDGA-NWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRSFVYVR 95
Query: 288 AGTVNMTRPAVVFE 329
N R V E
Sbjct: 96 EPKNNRERSFSVKE 109
>AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical
protein C24A1.2b protein.
Length = 365
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = -2
Query: 298 TVPALMTMVTRVAVQ*AAVSPQSLWMMVAPQALTAPSGFTMRSDSW*GNCPS-SASHPDT 122
TVP L T+ ++ Q + + P W+ A A TA + T R CP+ SASHP+
Sbjct: 103 TVP-LPTVTQQIPWQTSTIWP---WIQQAQSASTADA--TQRWLQSALLCPTTSASHPNL 156
Query: 121 ILAPALTFSTKVRAGSADTTATPAIATRSKTAHC 20
+ P ++ + A TA P I++ T C
Sbjct: 157 LTIPQISVQPQPTAPQTLLTAAPFISSTVFTPTC 190
>AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical
protein C24A1.2a protein.
Length = 420
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = -2
Query: 298 TVPALMTMVTRVAVQ*AAVSPQSLWMMVAPQALTAPSGFTMRSDSW*GNCPS-SASHPDT 122
TVP L T+ ++ Q + + P W+ A A TA + T R CP+ SASHP+
Sbjct: 158 TVP-LPTVTQQIPWQTSTIWP---WIQQAQSASTADA--TQRWLQSALLCPTTSASHPNL 211
Query: 121 ILAPALTFSTKVRAGSADTTATPAIATRSKTAHC 20
+ P ++ + A TA P I++ T C
Sbjct: 212 LTIPQISVQPQPTAPQTLLTAAPFISSTVFTPTC 245
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 120 IVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHCTAT----RVTIVIR 287
I++G+ A S+ P+G N CG +I +T+AHC + VT +
Sbjct: 17 IINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVT 76
Query: 288 AGTVNMTR 311
G V++ +
Sbjct: 77 LGDVHLNK 84
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -2
Query: 157 GNCPSSASHPDTILAPALTFSTKVRAGSADTT--ATPAIATRSKTAHCAISEK 5
G SSASHP + L + S + T ATPA T T H IS K
Sbjct: 1471 GKNESSASHPSSSLQSSRHSSKFASKATTPRTGDATPASMTSRSTRHSVISRK 1523
>Z99942-6|CAI79199.1| 119|Caenorhabditis elegans Hypothetical
protein H13N06.7 protein.
Length = 119
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 320 CFRDDRLFKPPTLRRIDTADCTTSRHRPHQVWTL 421
CF+ RL + R DT++C + P + WTL
Sbjct: 52 CFKSSRLENVKSCREADTSNCAAPEY-PTRKWTL 84
>Z35663-9|CAA84730.1| 219|Caenorhabditis elegans Hypothetical
protein T04A8.11 protein.
Length = 219
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 132 WEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTA 248
++AE+G+ Y+ + RM+ G V +IH +GL A
Sbjct: 32 YDAEKGEKKYKSTKRMIEARG-VEEVHTELIHEQYGLAA 69
>Z35598-7|CAA84650.2| 325|Caenorhabditis elegans Hypothetical
protein F10F2.3 protein.
Length = 325
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 468 YHKDYNYDGYRLTATGWGRTWTNGT 542
Y + NY L AT WG TW +G+
Sbjct: 97 YFLEQNYTEAELYATTWGDTWGSGS 121
>AC006656-3|AAF39882.1| 549|Caenorhabditis elegans Hypothetical
protein H12I13.3 protein.
Length = 549
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = +3
Query: 324 FETTDY-LNHPLYDESIQQIV 383
F+ +DY NHPLYDES ++++
Sbjct: 450 FDFSDYPKNHPLYDESNKKVI 470
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,463,309
Number of Sequences: 27780
Number of extensions: 341511
Number of successful extensions: 901
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -