Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f17f
         (775 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061108-1|AAL28656.1|  708|Drosophila melanogaster LD09551p pro...    56   5e-08
AE014296-285|AAN11490.1|  708|Drosophila melanogaster CG12099-PB...    56   5e-08
AE014296-284|AAF47511.1|  708|Drosophila melanogaster CG12099-PA...    56   5e-08
BT028844-1|ABI34225.2|  312|Drosophila melanogaster RT01107p pro...    30   4.1  
AE014297-800|AAF54277.2|  312|Drosophila melanogaster CG11762-PA...    30   4.1  
AE014296-2669|AAF49517.1|  188|Drosophila melanogaster CG13071-P...    29   7.1  

>AY061108-1|AAL28656.1|  708|Drosophila melanogaster LD09551p
           protein.
          Length = 708

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
 Frame = +2

Query: 473 SASSQM--DGTPNSRLGDDDEPEIGSVFVPGSKKQNFNHLLNFMYPTRGNIERSERRGPL 646
           S SS++    T  SR GD D  E+ SV+  GSKKQN NHLLNF       + R   RG  
Sbjct: 95  SGSSRLAYSATGYSRSGDFDH-ELNSVYTQGSKKQNLNHLLNFHC-----VPRELERGHH 148

Query: 647 LQRQQFHRLSFRQ---DHDLYLRAYCQFVVKEDYDYKINSLDPD 769
            Q QQ H LS R+   + + +L+A  QFV++     ++N   PD
Sbjct: 149 HQAQQHHGLSGRKQRYNKEQFLQANFQFVIRSGAKAQVNG-SPD 191


>AE014296-285|AAN11490.1|  708|Drosophila melanogaster CG12099-PB,
           isoform B protein.
          Length = 708

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
 Frame = +2

Query: 473 SASSQM--DGTPNSRLGDDDEPEIGSVFVPGSKKQNFNHLLNFMYPTRGNIERSERRGPL 646
           S SS++    T  SR GD D  E+ SV+  GSKKQN NHLLNF       + R   RG  
Sbjct: 95  SGSSRLAYSATGYSRSGDFDH-ELNSVYTQGSKKQNLNHLLNFHC-----VPRELERGHH 148

Query: 647 LQRQQFHRLSFRQ---DHDLYLRAYCQFVVKEDYDYKINSLDPD 769
            Q QQ H LS R+   + + +L+A  QFV++     ++N   PD
Sbjct: 149 HQAQQHHGLSGRKQRYNKEQFLQANFQFVIRSGAKAQVNG-SPD 191


>AE014296-284|AAF47511.1|  708|Drosophila melanogaster CG12099-PA,
           isoform A protein.
          Length = 708

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
 Frame = +2

Query: 473 SASSQM--DGTPNSRLGDDDEPEIGSVFVPGSKKQNFNHLLNFMYPTRGNIERSERRGPL 646
           S SS++    T  SR GD D  E+ SV+  GSKKQN NHLLNF       + R   RG  
Sbjct: 95  SGSSRLAYSATGYSRSGDFDH-ELNSVYTQGSKKQNLNHLLNFHC-----VPRELERGHH 148

Query: 647 LQRQQFHRLSFRQ---DHDLYLRAYCQFVVKEDYDYKINSLDPD 769
            Q QQ H LS R+   + + +L+A  QFV++     ++N   PD
Sbjct: 149 HQAQQHHGLSGRKQRYNKEQFLQANFQFVIRSGAKAQVNG-SPD 191


>BT028844-1|ABI34225.2|  312|Drosophila melanogaster RT01107p
           protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 233 FLLMLEESRMDKKLNRSTQPQSRASAVDCK 322
           F +++EE  MDK LNR  + Q R   +D K
Sbjct: 119 FQVLIEEEPMDKTLNRDAKAQLREDGIDEK 148


>AE014297-800|AAF54277.2|  312|Drosophila melanogaster CG11762-PA
           protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 233 FLLMLEESRMDKKLNRSTQPQSRASAVDCK 322
           F +++EE  MDK LNR  + Q R   +D K
Sbjct: 119 FQVLIEEEPMDKTLNRDAKAQLREDGIDEK 148


>AE014296-2669|AAF49517.1|  188|Drosophila melanogaster CG13071-PA
           protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 770 HQDPMSLSCNHNLPSLQIDNKLLGTDHDLVEKINGG 663
           H  P+  S  H+LPS+++   +  T H +V  I+ G
Sbjct: 142 HSSPILTSSYHSLPSVRVIQPIWTTSHSVVHPISYG 177


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,477,370
Number of Sequences: 53049
Number of extensions: 768279
Number of successful extensions: 1868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1868
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3581842374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)