Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f16r
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    89   8e-19
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    87   3e-18
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    28   2.1  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.7  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   4.9  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   8.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   8.6  

>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
 Frame = -3

Query: 870 SASVARGDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAG-------DNAE 712
           S  + + DQ+  L++ GVI P C++L+  D ++I V LD + N+LK+         +N  
Sbjct: 403 SGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLENIN 462

Query: 711 QVANMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDG 532
           Q A  +EE GG+D I DLQ+    +IY  AY IIE+YF+ E+    L P     AF F  
Sbjct: 463 QYAVYVEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAFTFGN 522

Query: 531 G 529
           G
Sbjct: 523 G 523



 Score = 35.5 bits (78), Expect = 0.011
 Identities = 22/94 (23%), Positives = 42/94 (44%)
 Frame = -3

Query: 849 DQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQVANMIEECGGIDK 670
           +++ A+++ G  P    LLS     +    L  + N++   G +A+    +I +CG ++ 
Sbjct: 281 EKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIV--TGTDAQ--TQIIIDCGALNA 336

Query: 669 IEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLV 568
              L +H+K  I K A   I    AG  +    +
Sbjct: 337 FPSLLSHQKENIRKEACWTISNITAGNTQQIQAI 370



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 23/92 (25%), Positives = 41/92 (44%)
 Frame = -3

Query: 846 QVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQVANMIEECGGIDKI 667
           Q+ A+I   +IPP  +LLS  D +        +SN         +Q+  ++ + G I  +
Sbjct: 366 QIQAIIESNLIPPLVHLLSYADYKTKKEACWAISNATSGGLGQPDQIRYLVSQ-GVIKPL 424

Query: 666 EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASL 571
            D+      +I ++A D IE      E D ++
Sbjct: 425 CDMLNGSDNKIIQVALDAIENILKVGEMDRTM 456


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
 Frame = -3

Query: 870 SASVARGDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMA----GDNAEQV- 706
           S    R DQ+  L+  G I P CNLL+C+D ++I V LDG+ N+L++      +N +++ 
Sbjct: 403 SGGARRPDQIRYLVEQGAIKPLCNLLACQDNKIIQVALDGIENILRVGELDRANNPDKIN 462

Query: 705 --ANMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDG 532
             A  +E+ GG+D I + Q     EIY+ AY+IIE++F  E+E   L P      F F  
Sbjct: 463 LYAVYVEDAGGMDLIHECQNSSNSEIYQKAYNIIEKFFGEEDEIEELEPETVGDTFTF-- 520

Query: 531 GAADKEPPPFRF 496
           G   +    F+F
Sbjct: 521 GTTQEPAGDFQF 532



 Score = 34.7 bits (76), Expect = 0.019
 Identities = 23/100 (23%), Positives = 44/100 (44%)
 Frame = -3

Query: 864 SVARGDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQVANMIEEC 685
           +     Q+  +I   +IPP  +LL+  D ++       +SN         +Q+  ++E+ 
Sbjct: 360 TAGNSSQIQYVIEANIIPPLIHLLTTADFKIQKEACWAISNATSGGARRPDQIRYLVEQ- 418

Query: 684 GGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVP 565
           G I  + +L   +  +I ++A D IE      E D +  P
Sbjct: 419 GAIKPLCNLLACQDNKIIQVALDGIENILRVGELDRANNP 458



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 910 FKPQKEAAWAVSXLSISGTRGPSCCTY 830
           FK QKEA WA+S  +  G R P    Y
Sbjct: 388 FKIQKEACWAISNATSGGARRPDQIRY 414


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 612 IEQYFAGEEEDASLVPAAGEAAFQFDGGAADKE 514
           IE+  A   E  S VP+AG  A    GGAA  E
Sbjct: 51  IEELIAAGNEKLSTVPSAGAVATPAAGGAAGAE 83


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 521 SAAPPSNWKAASPAAGTSDASSSSPA 598
           S  PPS   +A+PA   + ASS++PA
Sbjct: 60  SGPPPSYSNSAAPATPAASASSAAPA 85


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +2

Query: 428 SGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPA 598
           S  A V   +G H     S PS     G S  + P S     SPA G    S+ +PA
Sbjct: 266 STIAEVSPMYGSHAAPYASTPS--AAVGSSRGSTPASATVPISPARGFPTTSAYNPA 320


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 344 KLGVHLL*TTNRPVFGEAVEKVFIRCLVSGAAS 442
           KL  + + +TN PVFG AV+ V    ++S ++S
Sbjct: 158 KLSSNSIKSTNAPVFGTAVKNVTGENILSASSS 190


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 512 GSLSAAPPSNWKAASPAAGTSDASSSSPA 598
           G+ S APP++  + +PA G+   S   PA
Sbjct: 180 GTTSNAPPASSTSTTPATGSGGFSFGKPA 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,975
Number of Sequences: 5004
Number of extensions: 65859
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)