Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17f16r
(920 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 86 3e-17
05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319... 79 5e-15
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 74 2e-13
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 69 5e-12
01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304... 43 4e-04
01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357 29 3.9
08_02_1355 + 26343939-26345054 29 6.9
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 28 9.1
06_02_0027 - 10750322-10750585,10750992-10750997 28 9.1
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 86.2 bits (204), Expect = 3e-17
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 12/121 (9%)
Frame = -3
Query: 849 DQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLK-------MAGDNAEQVANMIE 691
DQ+ L++ G I P C+LL C D +++ V L+GL N+LK +A + + MI+
Sbjct: 403 DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMID 462
Query: 690 ECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEED---ASLVPAAGEAAFQF--DGGA 526
E G++KIE+LQ+H+ EIY+ A I+E Y+ EE+D A+ V A A F F GGA
Sbjct: 463 EAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGGGA 522
Query: 525 A 523
A
Sbjct: 523 A 523
Score = 36.7 bits (81), Expect = 0.026
Identities = 28/99 (28%), Positives = 47/99 (47%)
Frame = -3
Query: 849 DQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQVANMIEECGGIDK 670
DQ+ A+IN G+I P NLL + + +SN +G + +Q+ ++ E G I
Sbjct: 360 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN--ATSGGSHDQIKYLVSE-GCIKP 416
Query: 669 IEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGE 553
+ DL + I + + +E E D +L AAG+
Sbjct: 417 LCDLLICPDIRIVTVCLEGLENILKVGETDKTL--AAGD 453
>05_01_0405 -
3191639-3192059,3192107-3192234,3192312-3192440,
3193538-3193616,3193716-3193879,3193968-3194153,
3194258-3194389,3194484-3194575,3195054-3195150,
3195258-3195485
Length = 551
Score = 79.0 bits (186), Expect = 5e-15
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Frame = -3
Query: 834 LINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKM--------AGDNAEQVANMIEECGG 679
L+ G I P C+LL C D +++ V L+GL N+LK+ AGD A MI++ G
Sbjct: 431 LVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGD-VNSYAQMIDDAEG 489
Query: 678 IDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAADKEPPPFR 499
++KIE+LQ+H+ EIY+ A ++E Y+ EE+DA +P+ A F+ G P
Sbjct: 490 LEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDA--MPSGDNAQNGFNFGNQQPNVPSGG 547
Query: 498 F*LG 487
F G
Sbjct: 548 FNFG 551
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 73.7 bits (173), Expect = 2e-13
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Frame = -3
Query: 870 SASVARGDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMA-------GDNAE 712
+AS DQ+ L++ G + P CN+L+ +D ++ L+GL N+L+ G
Sbjct: 432 AASGGSNDQIQYLVSRGCLEPLCNVLTYQDADLVYACLEGLQNILQAGAVGKQGQGSTVN 491
Query: 711 QVANMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGE-EEDASLVPAAGEAAFQFD 535
A I ECGG+DK+EDLQ + IYK+ ++E Y+ E +D +P + ++A +
Sbjct: 492 PYAQFILECGGLDKLEDLQEVDNDAIYKLVMKLLEGYWDEEVSDDDPNLPTSNDSAETVE 551
Query: 534 GGAADKEPP 508
+ D P
Sbjct: 552 TASEDAAQP 560
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 68.9 bits (161), Expect = 5e-12
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Frame = -3
Query: 849 DQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLK-------MAGDNAEQVANMIE 691
+Q+ L++ G I P C+LL +D++ + L+ L N+L+ + N M++
Sbjct: 403 NQIEYLVSQGCIKPLCDLLVHQDSKTVLTCLEALDNILRVGEAKKNLGACNMNIFVPMVD 462
Query: 690 ECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDAS-LVPAAGEA 550
E G+DKIEDLQ H+ +EIY A ++E Y+ E++ L+P+ E+
Sbjct: 463 EADGLDKIEDLQNHDNVEIYNKAVYVLESYWVQEDDQQPFLIPSVSES 510
>01_01_0402 +
3046504-3046582,3047265-3047487,3047954-3048107,
3048253-3048355,3048554-3048738,3048972-3049051,
3049433-3049511,3050015-3050096,3050221-3050279,
3050379-3050684,3050825-3050989
Length = 504
Score = 42.7 bits (96), Expect = 4e-04
Identities = 25/88 (28%), Positives = 46/88 (52%)
Frame = -3
Query: 849 DQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQVANMIEECGGIDK 670
+ + A+++ G +P F +L+ D + L L L M G +Q ++E GI+
Sbjct: 415 EHLVAIVDGGALPGFIHLVRSADVDTAGLGLQFLE--LVMRGYPNKQGPKLVEMEDGIEA 472
Query: 669 IEDLQTHEKMEIYKMAYDIIEQYFAGEE 586
+E Q HE ++ MA ++++YF GE+
Sbjct: 473 MERFQFHENEQMRNMANGLVDEYF-GED 499
>01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357
Length = 375
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 407 VFIRCLVSGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASP-AAGTSDAS 583
+F R L+ A G + + + + + GGG+ +A PP W ++P AA + A+
Sbjct: 227 LFSRLLLPHAVGGGGSAAEEEAAIVTCLAAVISGGGAAAAPPPLIWPTSAPEAAFVASAA 286
Query: 584 SSSPA 598
SP+
Sbjct: 287 GHSPS 291
>08_02_1355 + 26343939-26345054
Length = 371
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 812 GITPQLISAATWSPRATDAEXGNGPSSFLLG 904
G ++ S+ATW+ A D E G P+S L G
Sbjct: 177 GAAVEVFSSATWAWTARDTEFGGVPASSLSG 207
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 467 GVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 595
G G G+ PS + G G APPS + S G SS P
Sbjct: 59 GGGYGAPPSTQPYGSGGGYGAPPSTQRPQSYGGGYGAPPSSQP 101
>06_02_0027 - 10750322-10750585,10750992-10750997
Length = 89
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 458 GQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPAK 601
G H G+AP+ RK S + PP +A P T+D + SPA+
Sbjct: 32 GNHSAVTGAAPAPHRKEQYSAAYRPPMPSPSAPP---TADREACSPAR 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,880,659
Number of Sequences: 37544
Number of extensions: 466187
Number of successful extensions: 1899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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